Larimichthys crocea (large yellow croaker): 104918510
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Entry
104918510 CDS
T04659
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104918510 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104918510 (taf5l)
03036 Chromosome and associated proteins [BR:
lco03036
]
104918510 (taf5l)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104918510 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
104918510 (taf5l)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104918510 (taf5l)
STAGA complex
104918510 (taf5l)
TFTC complex
104918510 (taf5l)
SAGA complex
104918510 (taf5l)
SLIK complex
104918510 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_IP5PC_F
Nbas_N
Beta-prop_ELP1_1st
Lysis_col
Motif
Other DBs
NCBI-GeneID:
104918510
NCBI-ProteinID:
XP_010728588
UniProt:
A0A0F8CDY2
LinkDB
All DBs
Position
X:complement(29677682..29683531)
Genome browser
AA seq
600 aa
AA seq
DB search
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPGQYEAQYARLRSFLSETEISWAKEVSSILYPLFVYLHLDMVHCGLKGAVDGFYS
RFHGAFLQDSEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAHSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAAGGATAAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQMLNTAEVSADSRLLSAGFDS
STVKLWSLRARKLKAKPHQADVSLIHLACDVLEEEVDEEDGSGSEIKTLRGHSGPVFRTA
FLMDSSGLLSCSEDTTIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYPLRVYAGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLATGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKTEQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcactgagcagatccagtatgccgtggctcagtacctgaagcggagg
cagtatgtggacactgatgggtccctgaagggagccaagctcttccaatcagccgaggag
atggctgctagcctcacagtgcagacagagtccgggtgtgccaacatcgtctcggctgca
ccctgccagtctgacccaggacagtatgaggctcagtacgccaggctgcgctcctttctg
tcagaaacagaaatatcctgggcaaaggaggtgagcagcattctctacccgctcttcgtg
tacctccacctggatatggtgcactgtggcctgaagggggcagtagatggtttttacagt
cgtttccacggtgcctttcttcaggacagcgagcagcgtgccactatagagcagctccgc
catgtcctcaccgctcaggatgttgcagccaaccccaagctgagcgctttcctggagcac
aagtacgtggttcacctgacagagccagcccacagctacctgctgcgttacctgcagagc
gaagacaacagcgccctctgcagggctctcagcacacacctgcaggtggaggtcactgcc
tcgaggcgcacagactaccagctgtacggagctgcaggtggagcgaccgcagccccaaac
tccacctcctcctgggcgggagtggatggggcagagggtggggaaggggtggaggtccct
gcaggcatacctcagagtgaggcggccctggaggctctgcaggactgcatcaagaaagtc
cgcgagggtcccccgacgctcaccaccgtgtgtttttacgccttccatcacacggagcag
atgttgaacactgcagaggtatcggctgacagccggctgctgtctgccggctttgacagc
tccaccgtgaagctgtggagcctccgggccagaaagctgaaggccaaaccacatcaggct
gacgtgtcgcttatccacctggcctgcgacgtactggaggaggaagtggatgaggaagat
ggctctggcagcgagataaagactttgcgaggtcacagcggcccagtgtttcgtaccgct
ttcctgatggacagctccggcctgctctcctgctctgaggacacaaccatccgctactgg
gatctgggtagcttcaccaacacggcgctctaccagggccatgcctacccggtgtgggac
gtggacgtcagcccctgcagcctttactttgccagcggctcccacgaccgcacggcccgc
ctctggactttctctcgcacctacccactgcgggtctatgctgggcatctttcagacgtc
gactgtgtcaaattccacccaaactccaactacctggccactggatccacagacaagact
gtccggctctggagcacccagcagggggcgtctgttcgcctcttcacaggccaccgtgga
ccggtgctgtcactcgctttctcacctaatgggaagtatctggcgtccgctggcgaggac
cagagggtgaagctatgggacttggctacagggacgctgttcaaagacctgcgggggcac
acagacagcgtcaccagcctgtctttcagccctgacagcagcctggtggcatcgtcgtct
atggacaactcagtccgggtgtgggacatccggaattcccacggcgggacgccggctgac
ggctcgtccagcgaactggtgggactgtacactggaaacaccagcaacgtactgaacgtc
cagttcatggcctgcaacctgctgctggtgacaggaaccgcacaagagaaaacagaacag
tag
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integrated database retrieval system
