Larimichthys crocea (large yellow croaker): 104918567
Help
Entry
104918567 CDS
T04659
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104918567 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104918567 (xab2)
03041 Spliceosome [BR:
lco03041
]
104918567 (xab2)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104918567 (xab2)
Spliceosome [BR:
lco03041
]
Complex B
Other components
Prp19-related factors
104918567 (xab2)
Complex C
104918567 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_19
TPR_2
Suf
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
SNAP
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
104918567
NCBI-ProteinID:
XP_010728663
UniProt:
A0A0F8ASY4
LinkDB
All DBs
Position
XII:complement(9841203..9850180)
Genome browser
AA seq
850 aa
AA seq
DB search
MPSQNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGLKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCISEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEL
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDGDDEDQGPDEVQLEQKSVP
TAVFGGLKED
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgcaaaatggaaaacccgatgtcatgtttgaggatgatgatttgccttatgaa
gaggagattatccggaacccatattcagttaaatgctggatgcgctacattgaattcaaa
caaaatggactgaaatccaccctgaacatgatctatgagcgggctctgaaagagctgcct
ggcagctataaactgtggtacaattatctgagagagagacggaaacaagtcaaagggaaa
tgtatcagtgagccaggctatgaagaggtcaataactgccatgaaagagcgctggtgttt
atgcacaagatgcccagaatctggcttgattactgccagttccttgtgtctcagtgcaag
ataacaagaagtcggcaaacgtttgaccgtgcactcagagcccttcctgttactcagcac
ccgcgcatctggcctctgtatctccgctttgtccgtaacctgcccctgcctgagacagcc
atcagggtctaccgcaggtaccttaagctttctccagagaatgcagaggaatacatagac
tacttacgatctgttggtcgcttggacgaagcagctgtgcgactggcagctgttgtcaat
gacgaaagctttgtttccaaagagggcaaatctaactatcaactgtggcatgagctatgt
gacctgatctcccaaaaccctgataaggtgacctctctgaatgtaggagccatcatccga
ggaggcctcactcgctttacagaccaacttggaaaactctggtgctctttagctgactat
tacatcaggagtggccactttgagaaggctcgtgatgtatatgaggaggccatccttaca
gtggtaacagtaagggatttcacacaggtgttcgatagttatgcccagtttgaagagagc
atgattgcagcaaagatggagaccactgctgagatggggcaggatgaagatgaggacata
gatctggagctcagactggctcgctttgagcagctgatagcccggcgccccctcctgttg
aacagtgtgctactgcggcagaacccccataatgtccatgagtggcacaagagggtaaag
ctgtatgagggcaatccgcggcagattattaacacatacactgaggcagtccagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgatcagctggatgatgctaggacaatttttgagaaggctactaaggtgaac
tacaagcaggtggatgaccttgctgcggtgtggtgtgaatatggagaaatggagctacgc
catgagaactatgaacaggcgctgcgcatactgaggaaagctacagccatcccatcgaag
aaagctgagtactttgatgcatccgagccagttcaaaacagagtctacaagtccttgaag
gtctggtctatgctggcagacttagaggagagccttggcactttccagtccaccaaagca
gtgtatgaccgcattattgacctccgcatcgccacgccacagatcatcatcaattacgcc
atgtttcttgaagagcacaactactttgaggaaagcttcaaagcatacgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggaggcaagaagctggaaagagctagagatttatttgagcaagccctggat
ggctgccctgccaagtttgccaaaaccatttacctgttgtatgccaaactggaggagggt
tatggattggcccgacatgccatggctgtctatgagagagcaacccaggcagtagagact
gaggaaagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acatatacaagagcaatttaccagaaggccattgaggtccttcctgatgagcatgcaagg
gacatgtgtctgagatttgctgacatggagagtaaactgggtgagattgatcgtgccaga
gcaatctactcatactgctcccagatctgtgacccccgggtgactgctaatttctggcaa
acatggaaagaatttgagatccgccatggaaatgaggacacaattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
cttaaggccacaacaagctccacaggcacagtgtcagatcttgctccaggccaaatggga
attgatgacatgaagatgttggagcagaaagcacagcagcttgctgcagaggccgagctg
gacaaacccaaaccaaaagagaagattctcttcgtcaggagtgacacctctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagatcgacattgatgatgacgatgag
gatggagatgatgaagaccagggaccggatgaggtacagcttgagcagaagagtgtcccc
acagctgtcttcggagggcttaaagaagactga
DBGET
integrated database retrieval system
