KEGG   Larimichthys crocea (large yellow croaker): 104918905
Entry
104918905         CDS       T04659                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03420  Nucleotide excision repair
lco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    104918905
   03460 Fanconi anemia pathway
    104918905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lco03032]
    104918905
   03400 DNA repair and recombination proteins [BR:lco03400]
    104918905
DNA replication proteins [BR:lco03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    104918905
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     104918905
SSDB
Motif
Pfam: ERCC4 HHH_5
Other DBs
NCBI-GeneID: 104918905
NCBI-ProteinID: XP_027145245
LinkDB
Position
XVI:complement(11455277..11461880)
AA seq 900 aa
MASGLLAPTWRAAVEFETEMFLSLFGSTGXLVERGMGIDRIDSAAVMRVYSEEGSLVLLS
TQPQPXQEYFTEQLRMEGWTHLPRTVTSDVQSAERYNVYTQGGVLFVTSRILVVDFLTDR
IPAHLYQVXHLLYHPSGILVYRAHKIIESCQEAFILRLFDTKNKTGFIKAFTDKATAFSS
GFCQVERVMRNLFVKKLYLWPRFQASVNTALDRHKPEVVELHVSLTPAMRAIQSSILDIM
SACLKELKRYNPTLEAEDLSLENTLGRSFDKTIRHYLDPLWHQLGAKTKGLVQDLKVLRV
LLLYLTQYDCVXFLNLLESLRSSQKIXGSNSGWLFLDSSTSMFMNARARVYYAPESKKKL
KVGAEAEKQKSSMLRXLKLKRELVLEKSPRWEALTEVLQEIERENKSSQQEPGGVLICAS
DDRXCAQLQQCIRHSSEWMLNRLYAARXRKRDSAAAAAFELDAHKRXKGWPQKGAKGKEX
AQKKNTKSTKSKKRPSXTLTQMVGNEETDEAAXDGQHGDEDELMGEEEEEXEADLSSDAY
YGVLKEPLIVIHPLKGLTDPXQLTRVLHEVEPSYVVLYDAELSFVRQLEIYKASRPGKTL
RVYFLXYGGSTEEQKYLTALSKEKKAFEHLIRSKGTMVIPEEREGRKDTNLDLARNLGAC
NAHTNTRKAGGQEQPKEPSRVXVDMREFRSELPSLLHRRGLDIEPVTXEVGDYXLTPDTC
VERKSVSDLIGSLQSGRLYTQCRAXTRYYKKPVLLIEFDPAKPFSLMARTDFPHEISSND
ISSKLTLXHLAFPSARILWCPSPHATADLFLDLNKXSREPDAAAAQAVTAESDTVAESAD
LYXPGPYDFLXKMPGVNTKNXRALIKNADSLADLAKLSQEKLAEILGNSNNAKLLYEFSA
NT seq 2703 nt   +upstreamnt  +downstreamnt
atggcatctggtctgttggctccgacatggcgggccgctgtggagttcgagacggagatg
tttctgagtcttttcggctctacgggctgactggtggagcgggggatggggatagaccgc
attgactctgctgcagtcatgcgggtctactcggaggagggaagcctggtacttctgtca
acacaaccacaaccttaacaggagtatttcacggagcagttgagaatggagggttggacc
caccttcccaggacggtcaccagcgatgtccagagcgctgagcgctacaatgtatacaca
cagggtggagtgctgttcgtcaccagcaggatcctcgtggtcgacttcctcactgaccgc
atccccgctcatctatatcaggtgtaacatcttctgtaccacccctcaggcatcctggtg
tatcgtgctcataaaatcattgagtcatgtcaggaagccttcatccttcgtctcttcgac
acaaagaacaagacaggcttcattaaagctttcactgacaaggccacagccttctcctcg
ggcttctgccaggtggagcgtgtgatgaggaacctcttcgttaagaagctctacctgtgg
cccaggtttcaagcatccgtaaacacagcactggacaggcacaagccggaggtggtggag
ctccatgtgtcattgacgccggcgatgagagccatccagagctccatcctggatatcatg
agcgcctgtctgaaggagctgaaacgttacaaccccaccctcgaggccgaggacctctcc
ctggagaacacgctaggcaggtccttcgacaagaccatccgtcactacctggaccccttg
tggcaccagctgggagcaaagaccaaaggcctagtccaggacctgaaagtactgagggtt
ctcctgctgtacctcacccagtacgactgtgtgnacttcctcaatctgctcgagtcgctg
cgctccagccaaaagatcnttggatccaattcagggtggttgttcctcgactccagtacc
tccatgtttatgaatgccagagctagagtttactacgcacccgagagcaagaagaaactc
aaagtgggagcagaggcagagaaacagaagtcatccatgcttaggtaactgaagttgaag
cgggaactggtgctggagaagagcccgagatgggaggctctgactgaggtactgcaggag
attgaaagggagaacaagagctctcaacaggaaccaggtggtgtgctcatctgtgccagt
gatgacaggnactgtgcccagctgcagcagtgcatccgacacagctctgaatggatgctc
aaccgtctgtacgccgcacganntcggaaacgggactccgctgcggccgctgcctttgaa
ctcgacgcgcacaaaaggngcaaaggctggccccagaaaggagccaaggggaaggagnct
gcgcagaaaaaaaacacaaagtccacgaagagtaagaaaaggccgtccncgaccttgacc
cagatggtggggaacgaggagacagatgaagcagcgnntgatgggcagcacggagacgag
gatgaactgatgggggaggaggaagaagagnctgaagcggatttgtcatccgacgcctac
tatggtgtcctaaaggaaccactcattgtcattcacccactgaagggcctcactgatccc
nnacagctgacgcgggtgctgcacgaggtggagcccagttacgtggtgctgtacgacgct
gaactcagtttcgttcgccagcttgaaatctacaaagctagccggcctggaaaaacactc
agggtttatttcctcnactacggaggctcgacagaagaacagaagtacctgacggctctg
tctaaggaaaagaaagcctttgaacacctgatcaggtcaaaaggcactatggtcatccca
gaggagagggaagggcggaaagacaccaaccttgaccttgcaagaaatttgggagcctgc
aatgcacacaccaacacccgcaaagcaggaggccaggagcagcccaaagagccctcacgg
gtcnatgtggacatgcgtgagttccgcagtgagctgccctccttgctgcaccgccgcggg
ctcgacatcgaacccgtcactntagaagtcggtgattacnacctgaccccggacacatgt
gtagagcgcaagagcgtcagtgatctgattggctcattgcagagcggccgcctctacacc
cagtgtcgtgccnngacccgctactacaaaaaaccagtgctcctcattgagtttgaccca
gcaaaaccgttttccttaatggcccgaacggatttcccgcatgagatatcatctaatgat
atttcctcaaaactcaccttannccaccttgcatttccctcggcccgtatactctggtgc
ccctccccgcacgccacagctgacctcttcctagatctaaacaagnngtcgcgcgaacca
gacgctgcagcagctcaggcagtcacagccgagtcggacacggtggctgaatcggcagat
ctctacnaacccggaccttacgacttcctgtaaaaaatgcctggggtcaatacaaaaaac
ntaagggctcttataaaaaatgcagacagcctggcagatttagccaaactcagccaagaa
aagctcgcagaaatactcgggaattctaacaacgctaaattgctgtatgagttttctgca
taa

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