Larimichthys crocea (large yellow croaker): 104919005
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Entry
104919005 CDS
T04659
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104919005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lco03009
]
104919005
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
Pre-60S particles
RNases
104919005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Exonuc_VII_L
Dynein_C
KIX_2
Motif
Other DBs
NCBI-GeneID:
104919005
NCBI-ProteinID:
XP_010729207
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All DBs
Position
III:complement(34235358..34243262)
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AA seq
1201 aa
AA seq
DB search
MFSSSGLFADIHCPFVKRGLCERPHCLYKHASEVRDMFGASSIVDFAGVQDDNPFTDCGA
PVNDVTKAVCLQELERINKEIETVRHEVEQEQRRLSHYQTVQADSRNAASNLPVSKSETA
GKTVERCSHRLSGTNSTKTYSRERKYVVDNSKPRTDLEYDPLSNFSADLRSYSSSGKEQK
VKNGQGLKRARNSVSCDKNKPVNCQTQPLSEPLDDSNEDDVLIIDVPPLPDKKRGRVQKP
IAPVAGKSRQDKVEELREVQTIVLDTSPLCLANVEVCKVASQPASTVEENSVDSNCTAEN
NQGPSSGFEDLGRQTLKITPFQAAETVAEKSPEPASPPATTDQQEHNFNNLVVEKEEKAF
QVELPQGELPCSVENMNPLQPYNFPPKNSLFYKAPAVNTDSPCRPYTEQAQTTEPPAQNR
VSNQLSSTRCVPPRSQKTSSKIPGQTQEKAVVHRAPPGSCLEPPEPVSGRSQGRAQHNSS
SSSLTNRAESSSSLSTEQLLGEEKDEAAIIIDSSSDDEGELNYSEIELSDSDPMEECYRI
FMEANNEDKGTDEQPDVTVGATDAEKLEFNVKPQVLPGKKRVAHEAKHTEQPVAKSRPQP
QVLVPLRGPAVSGFASQPSITTKFQQVQEKASMLTASVKGGQAFVSTGCQRRPETQSAPF
PSAQTTESLQPALVQNAYMNYIPLGTAVIGVGNNLHLILPEGAFPLPVSSSPVTSVLTPI
SQVQTSCVAVKQMYHPPVVNPLHRYRTTAPVLIPALARKPSLTSALGSAHSIPAAPTPPQ
AAVKPMPTKRKLKQQCETAKDKVPHDIRQRYVNMFTEEFLKTTTNVNDAFEKALAEEKTV
YNRSVNKLKYLSIAVNALKRLKNQSAVTAKDENEVNSQRFKGNIPLNLKKLKGNADDMAL
YDSLKDYILTEERLIESNYPVQHPEKPGSAILFEDNKKSNTDPLKRICCRCGATYSVSQT
GKHTRKEECNYHYGKGVRSKVPGGVETRYSCCEAVMGAPGCQVFKLHVHDSLSLDGFLST
VPRHPSDTSCPGVYSLGCEMCYTIHGLELSRVTLVNSSLQVVYDTFVTPDNEVIDYNTRF
SGISEEDVRGNHTSLREVQETLMSFISADTILIGHGLETDLCALKLLHRSVVDTSVVFPH
RLGPPHKLTLNNLTAEYLRRIIQESGGSSWKTTTTIQVSLLFIYPVCFKPHYTSESKPKF
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctcgtctggtctttttgctgatatacactgtcctttcgtcaaacgtgggctc
tgtgagcggcctcactgtttgtacaaacatgcctcagaagtgcgggatatgtttggtgcc
tcatcgatagttgactttgcaggagtccaagatgacaatccgtttactgactgtggagca
ccagtgaatgatgtgaccaaagctgtctgcctccaggagctggagcgaatcaacaaggag
attgaaaccgtacgacacgaggtggagcaggagcaaaggcgactatcacattaccagact
gtacaggcggacagcagaaacgctgcatctaatttaccagtttccaagtcggagactgca
ggtaaaactgtagaaagatgttcgcacagactgtctggcacaaactctactaaaacatac
tccagagaaaggaagtacgtggttgacaactcaaaaccaaggactgacttggagtatgac
ccgctgtccaacttttctgctgacttgcggtcttacagctcatcaggtaaagagcaaaaa
gtgaaaaatggacaaggtttgaaaagagcaagaaactctgtatcttgtgataaaaataag
ccagttaactgtcagactcagccattgtcggagccacttgatgactctaatgaagacgat
gtcctgattatagacgttcctccgttgccggacaaaaagcgaggcagagttcagaaaccg
attgctcctgttgctggaaaatcccgccaggataaagtagaagaattgagagaggtccaa
actattgtacttgatacttcacccctgtgccttgcaaatgtggaggtgtgcaaggtcgca
tctcaacctgcctcaactgtagaagaaaatagtgttgatagtaattgcactgcagaaaac
aatcaaggtccatcttcaggttttgaagacctgggaagacaaaccctgaaaatcactccc
tttcaggctgctgaaactgtggctgagaaaagtcctgaacctgcaagtcctcctgccacc
acagaccagcaagagcacaactttaacaatctggtggtggaaaaggaagaaaaagcgttt
caggttgaattgccgcagggtgagctgccctgtagtgttgagaacatgaatccactgcaa
ccatataactttccaccgaagaattcacttttttataaagctccagctgttaacacggac
tcgccatgcaggccgtacactgagcaagcccagacaactgagccaccagctcagaataga
gttagtaatcagttgtcttccacaagatgtgtaccgccacgcagccagaaaacatcaagc
aaaattccaggtcagactcaggaaaaagctgttgttcaccgtgctccacctggaagctgc
ctggagccaccagaaccagtttcaggcagaagccaaggtcgtgcacagcacaactcgtct
tcatcaagtttgacaaacagagctgaatcatcatcatctctgtcaactgagcagcttttg
ggggaagagaaagatgaggcagcaataataattgattcaagttctgatgatgaaggtgag
ctcaattattcggaaatagagctgtctgacagtgacccaatggaggaatgctacaggatc
ttcatggaggcaaacaatgaggataaaggaactgatgagcagcctgatgtgactgttgga
gctacagatgcagagaagttggagtttaacgtgaaaccacaagtattgccaggaaagaag
agggtggctcatgaagccaaacacacagagcagccagtggccaagagcaggcctcagcct
caggtactggttcccctacgtgggcctgcggtgtcaggattcgcctcccagccctccatc
accaccaagttccagcaggtgcaggagaaagcctccatgctgactgcttcagttaaaggt
ggtcaggcttttgtttccacaggctgtcagaggagaccggagacccagagtgcacctttt
ccttcagctcaaaccactgaaagtttgcagcctgctcttgtgcaaaatgcttacatgaac
tacatacctttgggaactgccgtgatcggagtgggcaacaacttgcacttgatcctccca
gagggtgctttcccattgcctgttagttccagcccagttacttcagtgctaaccccaatc
agccaagtgcagacgagctgtgtcgctgtaaaacaaatgtaccatccacctgtagtaaat
cctctgcacagatatcgcacaacagcacctgtgctcatccctgcactggcacgtaaacct
tcactgacctctgcccttggatcggcacattcaattccagccgctcccactcctcctcaa
gctgctgtgaagccgatgcctactaaacgtaaattgaagcagcagtgcgagaccgccaag
gacaaagtgcctcatgacatccgacagcgttatgtcaacatgttcacagaggagttcctc
aaaacaacaaccaatgttaatgatgcctttgagaaggcacttgctgaggagaagactgtg
tataaccgcagtgtgaacaaactcaaatatctgagcattgcagtgaatgcactgaagagg
ctgaagaaccaaagtgctgttactgctaaagatgaaaatgaagtcaacagtcaaagattc
aaaggcaacattccacttaacctgaagaagttaaaaggaaatgcagatgatatggcattg
tatgacagtctgaaggactatattttgactgaggaaaggctgattgagagcaactaccct
gtccagcatccagagaaacctggttctgctattctgtttgaggacaataagaaaagcaac
acagaccccctcaagaggatctgttgtcgatgtggggctacatactctgtgagccaaaca
ggcaaacacacccggaaggaggagtgtaattaccactatgggaaaggagttagaagtaaa
gtgccaggtggagtggagacccgctacagttgctgtgaggcagtaatgggtgcacctgga
tgtcaggtgtttaagttgcatgtccatgattccctcagcctggatgggtttctctcgacc
gtccccagacatccctcagatacgagctgtcctggggtctactctttgggttgtgaaatg
tgttataccattcatggtctggagttgtccagagtgacgttggtcaactctagtctgcaa
gttgtctatgacacctttgtcacaccggataatgaggtcatcgactataacaccaggttt
tcaggcatcagtgaagaagatgtgaggggtaaccacacctccctgagagaggtgcaggag
accttaatgagcttcattagtgctgacaccattctgattggacacggcctggaaacagat
ctctgtgccctaaagttgctccataggtcagtggtggacacatcagtggtcttcccccac
cgtctggggccccctcacaagctgaccctcaacaacctcactgctgaatacttaaggagg
atcatccaagagagtggtgggtcatcatggaaaactacaaccaccatacaagtgtctctt
ttatttatatatccagtctgttttaaaccccactatacatctgaatcaaaacctaaattc
aaataa
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