Larimichthys crocea (large yellow croaker): 104919072
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Entry
104919072 CDS
T04659
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1 isoform X2
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104919072 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104919072 (sh3rf1)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104919072 (sh3rf1)
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104919072 (sh3rf1)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104919072 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
104919072
NCBI-ProteinID:
XP_010729293
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Position
XVII:complement(12898906..12930442)
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AA seq
864 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDASAKVLPCQHTFCRRCLQGILGSRGELRCPECRTLVECAV
DELPSNILLVRLLDGIKQRPRRAGPGAGVCTNGTSGAVARAHSSGTRDQGTPGAQPQRAQ
TKSTLVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIELDKPSESNGDSGEGASSGPQSNGAQRAGEKKNSKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGEISGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETIYTSIPVDVLPPPPPPPPQSSVDGAAYSLAAGQRPSP
SISDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRTASGSTQPKVPMSLCTQAGRGITIVSPSSAPLGAIVPGPDFNKPLAVCSS
AVPTNSQPAAVVTAAQTATGQQPKVPLHVSSQMTVNQARNAVRTAACQSQDRPTAAVTPI
QSATPVTYLPHLAVCPQPSSSPAQGCTRAMGCAAVSLTPPNVSAASLEGDALRPVPILAV
PVGSVNSSALNPASNSATLACRLDKDVKREKKSLLKLLSSNKKKSRPSPPSSPTLEAEQA
AAGEALHGAVGPDTSPPSGSVNCLEPEPAAAAAAAVASSSSSSSSSAPESSHRKSSPLDG
CAPIAPPPRQPCSSLLSQQHDARPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKRED
GWFKGTLQRNGRTGLFPGSFVDSI
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatcagtattgttggatttgcttgagtgccccgtctgcctggagcgcctggat
gcctcagcgaaggttcttccctgtcagcacaccttctgccgccgatgcctccaaggcatc
ctaggctcgcgcggagagctgcgttgcccggagtgccggacgttggtcgagtgcgccgtg
gatgagctccccagcaacatccttcttgtgcgcttgttggatggcatcaagcagaggccg
cggagggctggtcccggggcaggggtctgcacaaatggcacgtcgggagccgtggccaga
gcgcacagcagtgggaccagggaccagggcaccccaggagcacaaccccagcgagctcag
actaagagcacccttgtccggggtgtaccccagctcccttgtgccaaggcgctctacaac
tacgatggcaaggaaccaggagacctcaagttcagcaagggcgacattatcatcctgcgc
cggcaagtggacgagaactggtaccacggcgagatgggtggagtccacggcttcttcccc
accaacttcgtccaggtcatcaagccgctgccgcagccgccgcctcagtgcaaagcgctc
tacgactttgagctcaaagacaaggaggcggacaaggactgtctgccattctccaaggac
gatatcctgactgtgatccgaagagtggatgaaaactgggcagagggaatgctgggagat
aaaattggaatttttcccatctcatatgtggagttcaactcggcagctcggcagcttatc
gagttggacaagccatcagaatccaacggagattctggcgagggggcctcctcggggccc
cagagcaatggtgctcagcgggcaggggagaagaagaacagcaagaagcgacattccttc
acctctctcaccatgtcccacaaacccatgctagctcctccccctcaacggcactccatg
gagatcagcgggccggtcctcatcagctccagtaaccctacggcagctgctcgaatcgga
gagatcagtggtgggctttcctgcagcgcaccttcacaggtacacatttgcacaactgga
ctaatcgtgaccccgccccctagtagtcctgttaccacagcaacggtcttcacatttccc
tcggagacaatctacacatctattcctgtggatgttctcccaccgcccccacctcctccc
ccgcagtcctccgtcgacggagcagcgtattcactggctgccggacagagaccctccccc
agcataagcgaccaaagtgggagacaaagacccacagtctacgtggctatgttcccatat
actccccgtaaggaggacgagcttgaactaaggaagggagagatgtttctggtgctggaa
cgctgtcaggatggctggttcaagggcacgtccatgcacactggcaagattggagtcttt
cctgggaactacatgagcccagtcagcaggactgcgtcggggagcacccagcccaaagtg
cccatgagtctgtgcactcaggctggcagagggatcaccatcgtcagcccctcttccgct
ccccttggtgccattgttccaggtcctgatttcaacaaacccctcgccgtgtgctccagc
gctgtaccaaccaactcccagcctgcagctgtggtaacagcagctcaaacagccactggc
caacagccaaaagtccctttgcacgtcagctctcagatgactgtgaatcaggctcgcaat
gcggtcaggacagctgcatgtcaaagtcaggaccgacccacagccgcagtgacaccaatc
cagtctgcaacaccggtgacctatctcccccacctcgccgtgtgcccgcagccttcctcc
agtcccgcccagggctgcacccgggcaatgggctgcgccgccgtctctctgaccccaccc
aacgtcagcgccgcgtcattggagggcgacgctttgagacctgtacctatcctcgccgtg
cccgtcggctccgtgaacagctcggctctcaatcccgcctctaacagcgccactctggct
tgcagactggacaaagacgtcaagagagaaaagaaaagtcttctgaagctgttgtcctcc
aataagaagaagtctcgtccttcaccaccctcctcgcctacccttgaggcagaacaggct
gctgccggtgaggcactgcatggcgcagtgggccccgacacctcccctccttccggctct
gtcaactgcctcgagcctgaacctgctgctgctgctgctgctgccgtcgcttcttcctct
tcatcctcctcctcctcagccccagagtcttcccatcggaagagcagtccccttgatgga
tgtgcacccatcgctcctcctcctcgccagccgtgctcctctcttttatctcaacaacat
gacgcacggcccatcatatgcgagaggtacagggtggtggtatcatatcctccccagagc
gaggctgagctggaacttaaggagggcgacattgtgtttgttcaccggaagcgggaagat
ggctggttcaaaggcacgctgcagaggaacggcaggaccggactgttccctggcagcttc
gtggacagcatctaa
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