Larimichthys crocea (large yellow croaker): 104919232
Help
Entry
104919232 CDS
T04659
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04382
Cornified envelope formation
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104919232
04518 Integrin signaling
104919232
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104919232
09142 Cell motility
04820 Cytoskeleton in muscle cells
104919232
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104919232
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104919232
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104919232
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104919232
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104919232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104919232
NCBI-ProteinID:
XP_019117675
LinkDB
All DBs
Position
XII:complement(14364156..14391582)
Genome browser
AA seq
1665 aa
AA seq
DB search
MGRPMSVVPLILFAVMLIGTGAQDCVCNRRSRCYCEGMKGSRGDRGFAGNQGPPGTTGRP
GSNGHAGPMGPKGNTGPDGPVGPKGDPGPEGKEGFAGSHGLPGIPGLQGPLGPSGEPGCN
GTDGDDGYPGVPGNHGIDGYPGQPGLPGPKGESQHFIDVMQGVQGPPGREGKLGYSGVPG
NTGPPGDPGARGSDGFPGRSGAPGAKGQEGIGRVPGPRGPKGTQGLQGAPGPPGRIKEFL
MGSLESKGAKGDTGDVGVKGCKGALGDPGNSYYRGAKGDKGQEGPEGEPGKDGVPGLPGF
VGKPGRRGDPGYPGTPGGTGEKGNRGPTGPPGQIVNKGYHGDLGPPGQPGLPGRQGIVGF
PGPRGPPGHASGIYQPGPHGPTGFPGPKGDPGEPGNIYTGLSGPDGDDGDPGPAGDPGLP
GPPEDRTNRTLKGHPGMKGVSGLLGPIGYDGLFGMKGQKGEPCYVCTGSGLPGPPGPRGL
PGIPGYNQGPGAKGDPGFPGPRGLPGGQGLIGERGNPGPPGQRGDSSSYNLPGIKGERGE
PGQHGRPGAGGLTGTPGLPGRKGHQGSKGDSYPGRGAEGDHGLQGPPGLLGRPGPDGYPG
PVGYGPAGFPGSKGEVGVPGLPGQPGVPGQKGEPGHIHIKGPPGLPGFKGLPGAPGRPGN
HGVSGAPGIPGFQGQKGEKGGTVYPGSPGIPGERGDKGQSGLPGYPGRGLPGRPGPQGPP
GPPGLKGDGGPGYPGPQGPPGLPGDDGAQGPVGDPGIPGLPGNPGSFGKPGFPGEKGSKG
SVGPPGVPGTKDSCKGLPGPAGPPGPDGSPGHPGLNGSPGEKGNTGLTGYGRPGFPGEPG
LIGLSVPGSRGLPGLKGIKGQNGLPGQPGLRGDPGPDGEPGYGPEGLPGIPGPPGQIGDQ
GPDGAIGPRGPPGMDGEQGPSGPRGPQPPHALDVTGPSGDPGELGYPGPSGCRGANGTTG
PKGQRGIEGAPAGPGPKGTPGEPGFDAPEFAQGNRGPAGAPGDPGIRGFPGLKGIKGDQG
IPGEPGPHGAPGTTGGKGAKGEPNYYGYGPPGPVGQKGEPGVTNNVKGQKGEPGVSGPAG
LPGFSGAKGNPGPVGQNGPPGNQGPGGLDGLPGSKGLPGPKGLAGNSGPPGVSGIPGPKG
NQGRDGIPGPPGQKGETSILGGPPGARGNTGQPGPPGNHGPPGLSVPGSPGSIGDRGLIG
LPGISGPRGLPGREGACIPGLKGYRGRPGDPGYHGRPGLPGPRGPTLLLPELKGDTGDQG
LPGDNGHKGPPGDPGPRGPPGDNGRPGEKGPRGDSGPLGIQGPLGYPGDPGYISGPPGPP
GPKGFPGRPGLKGETGFGKVIYEPGPPGLPGSIGNRGPPGITGPSGRTGLPGQQGVKGQR
RSGPVGQPGFTGHKGDKGRAGLPGPDGRIGDPGHKGSPGLPGRGAPGFVDSFLIARHSQS
IHIPDCPQGTSLMYSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCDTESNCRYA
SRNDYSYWLSTDTPMPANMVSITGEKLASYISRCSVCESTSNVIAVHSQTTLLPACPRGW
ETLWNGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLA
SLDPNSMFSKTIPQTVKGPSLQSVISRCRVCRKLYPGTDNRRGDN
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggggaggccaatgtctgtagttcctctgatcctgtttgctgttatgctgatcggcact
ggggcccaagattgtgtgtgcaatagaagatcgaggtgctactgtgagggaatgaaaggc
agcaggggagacagaggttttgcaggaaatcaaggtcctccaggtacaactgggcgtcca
ggatcaaatggtcatgctggacctatgggaccaaagggcaacactgggcctgatggacct
gtcgggccaaaaggcgatccgggacctgaaggcaaagaaggatttgctgggtctcatggt
ttgccgggtatcccaggtttacaaggacctttggggccctcaggggaaccaggctgcaat
gggacagatggtgacgatggatatcctggtgttcccgggaaccatggcattgatggatat
ccaggtcaacctggtctgcctggacctaagggtgaatctcagcacttcattgacgtaatg
caaggagtacaagggccacctgggagggaaggaaagctgggatattcaggtgtccctgga
aacacagggccaccaggggaccctggagcacggggctctgacggatttcctggtcgttca
ggggccccaggagctaagggtcaagaaggcataggtagagttccaggacctcgtgggcca
aaggggacacaaggactacaaggagcgccagggccaccaggtcggattaaagagtttttg
atggggagtcttgagtcaaagggcgcaaaaggagacacaggagatgtaggggtaaaaggc
tgcaagggtgcactcggagaccctggtaatagctactacagaggagcaaaaggagacaaa
ggacaggaaggtccagaaggagagccaggaaaagatggtgtgcctggactacctggattt
gtgggaaaacctggccgcagaggtgatccaggatatccagggacaccaggagggacgggt
gaaaagggaaataggggtcccactggtccacctggacaaatagtaaacaaaggataccat
ggagatcttggtcccccaggccaacctgggcttcctgggcgtcagggtattgtggggttt
cctggacctcgtggacctccaggccatgcatctgggatttatcaaccaggcccacatggt
cccactggctttccaggccccaaaggggaccctggagagccaggcaatatatatacagga
cttagtggtccagatggagatgatggtgatccagggcctgctggggatccgggcctacct
ggtcctcctgaagatagaactaacaggactctcaagggtcatccaggaatgaagggagtg
agtggtttacttggacctatcggatatgatgggctgtttggaatgaaaggacagaagggt
gagccctgttatgtgtgcactgggtcaggactcccaggaccacctggtccccgtggtcta
cctggcatccctggctataatcaaggaccaggtgctaaaggtgatccaggcttcccagga
cctagaggcttacctggtggacaaggtctgattggggaaaggggaaatccaggccctcct
gggcaaaggggagactcatcttcctacaacctccctgggattaagggagaaaggggagaa
ccagggcagcatggtaggcctggtgcaggtggccttactggaactcctggattaccaggt
cgcaaaggtcatcaggggtctaagggggattcgtatcccggccgtggtgcagagggagat
catggtttgcaaggtccaccagggcttttaggcagaccaggaccagatggctaccctgga
ccagtgggatatggaccagctggatttccaggaagtaagggagaagttggtgttcctgga
ctgccaggacaacccggagttccaggccagaaaggggagcctggtcacatccacatcaaa
ggacctccaggtctacctggatttaaaggtctgcctggagctcctggaagaccaggaaat
catggagtatcaggtgctccaggaataccaggttttcaaggacagaagggagagaagggt
ggcacagtatatcctggaagtcctgggatcccaggagagagaggtgacaaggggcagtca
ggactaccaggctacccaggaaggggcttgcctggtcgcccaggtcctcagggccctcct
ggtcctccaggattgaagggtgatggtggccctgggtaccctggtccccaaggaccccca
gggcttccaggagatgatggagctcagggacctgtaggagatccagggatacccggccta
cctgggaacccaggatcttttggcaaacctggttttccaggagaaaaaggaagcaaaggt
tctgtaggcccccccggagtacctggtactaaagattcatgcaaaggtttacctggacca
gcagggccaccaggaccagatggttctccaggacatccaggacttaatgggtcacccggt
gagaaggggaatacaggtttgacagggtatggtcgtcctggcttccctggtgagcctggc
ctcattgggctatcagtgccgggttcacgtgggctccctggactaaaagggatcaaggga
caaaatggcctccccggtcaaccaggactgagaggagatcctggaccagatggggaacca
ggatacggaccagaaggattgcctggaattccaggaccgccaggccaaataggtgaccag
ggaccagatggagccataggtccgcggggtcccccaggcatggatggggaacaaggtccc
agtggtcctcgcggccctcaaccaccacatgcattagacgttactgggccctcaggggac
cctggtgaactcggttaccctggtccatcaggttgtcgtggagctaatggaactactgga
ccaaaagggcagagagggatagaaggagcaccagcaggccctggaccaaaaggaacacca
ggtgagccaggttttgatgcaccagagttcgcgcaaggaaatcgaggacctgctggagct
ccaggagacccgggtatcagagggtttccaggcctaaaggggataaaaggagatcaagga
attcctggagagccaggtccacatggtgcaccaggtacaactggtggcaaaggagctaaa
ggagagccaaactactatggatatggacctcctggaccagtaggacaaaagggtgaacca
ggagtgaccaataatgtgaagggtcagaaaggtgaacctggtgtttcaggacctgcaggc
ctaccaggattcagtggagccaaaggaaacccaggaccagttggacaaaatggtccacca
ggcaatcaagggcctggaggtttagatgggcttccaggaagcaagggactgccgggacct
aaaggactggcaggtaactcaggtccacctggagtcagtggtattccaggtcctaaaggc
aaccagggccgggatgggatccctggaccaccagggcaaaaaggagagactagcatacta
ggagggcctcctggcgcacgtggaaacacaggtcagccaggtcctcctgggaaccatggc
ccccctggcctatctgttccagggagtcctggatcaataggagacagaggacttataggt
ctacctgggatctctggtccaagaggactgccaggaagagaaggggcttgtattcctggg
ttaaaaggataccgtggtcgtcctggtgatcctggttaccatggtcgtcctggcttacct
ggcccccgaggtcctacattactgttacctgagttaaaaggagacacaggggaccaaggt
cttccaggagacaatggccataaaggacctccaggagatccaggccctcgaggaccacct
ggtgacaatggcagacctggagaaaagggaccaagaggtgattctggtcctcttggaatc
caagggccccttggttacccaggagaccctggatacatctcaggcccgcctggtccgcct
ggaccaaaaggttttcctggacgacctggcctcaaaggtgaaacaggatttggcaaggta
atatatgaaccaggacctcctggtttacctggttccattggcaatcgaggacccccagga
attactggaccatcaggacgcacgggacttccaggccagcaaggcgtcaaaggacagcgt
cgatcgggcccagttggccagccaggttttactggccacaaaggagacaaaggaagagca
ggattgccaggtccagatggcagaattggagacccaggccacaagggttctccagggtta
ccaggcaggggtgctccaggttttgttgacagtttcctgatagctagacatagtcaaagc
atccatatccctgactgtcctcaaggaactagcctcatgtactctggttactccttcctc
ttcatcaacggaaatgagagagctcatggtcaggaccttggcaccatgggaagctgtctc
cctcggttctccaccatgcccttcctgttctgtgacacagaaagtaactgccgctatgct
tctcgtaacgactactcatactggttgtccactgacacacctatgcctgccaacatggtt
tccataacaggagaaaagctggcctcatacatcagcaggtgctcagtgtgtgaatccacc
tccaacgttatagcagtccacagccagacaactctgctacctgcctgtcccagaggttgg
gagactctgtggaatggatactcatttgtcatgcaaaccggtgctggtgcagagggctcc
tcccagcccctggtttcgcctggctcatgtctggaaagcttccgccaagtgcccttcatc
gagtgtcacggcaggggaacatgtaactactaccctgattcctatagttactggctggcc
tctctagaccccaacagcatgttcagtaaaaccattcctcagacagtgaagggaccatct
ctgcagagtgtcatcagccgttgtcgagtctgtaggaaattgtatcctggcacagataat
aggcgtggggacaattag
DBGET
integrated database retrieval system
