Larimichthys crocea (large yellow croaker): 104919291
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Entry
104919291 CDS
T04659
Symbol
scaf8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104919291 (scaf8)
03041 Spliceosome [BR:
lco03041
]
104919291 (scaf8)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104919291 (scaf8)
Spliceosome [BR:
lco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104919291 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104919291
NCBI-ProteinID:
XP_010729570
LinkDB
All DBs
Position
XXIV:complement(14776605..14801759)
Genome browser
AA seq
1448 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLHALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDTIFGQENSVATAQSSSQAQLPESE
NKLDDSIDNQQQDMDLDEGPDGMEEEIFEAEEKKIVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWE
AAKNAEPAKEVTNQPVSAETTAASNTQTETYNQQVTMMPVQSSLCLTQLPVAQAVPSAVG
LVPPAFTMGIPPPGYGPPPPFIRAGFNTSQPPPGFMQAAQTAAMASATTSLVQPSVATSQ
DAVKDSPFGAMIPPTSTIPGSFMASAIPGASMFNPVGVQAQQATNEKSGQSAEGMDAAAE
LTLQGMQNAVRSGMGLLGMHPTASLTHPLHQSGLAAQRMPGLLPLDVRPNLLQPGAAARF
PLLMQQGPAQQAAGLLDSALQAQARARAPFPQLDPFNRAPNLNNENLSKTENESSSGADE
GKDQDYRFPPMEKQSTGLLRTPPPEHRESLGGGGGAGNAGGGRPPLLQTPGTQPARTSLV
GRLQALAGFTPDNRWNQARGDFDERDNMRGGLQAPVGPKGFQEERPTPGQNFPNRFDSRP
GATGGAAGVSGNAGAVGGPQAWNRSGAATAPFDSELHQDLDERRRPWDRQRDRDERDFDF
RKEMNGNRHSRERERDRERERERERERDRERGRDRDRPREHERDRDRDKERDRERDRERG
GWTPLLPLPTPLLPTPPLNTNLSLNQGKLLAPLKLNPQLQPRFQSSLLPQAQGKPSLLGS
PGNQPLPQVPVPSQSQASEPELEPESETPTPSETPQAQSPPSAQSPDLSSDSKGQSPLTE
APTEGKSSPQPETLPQTESPSQLTAQSPSKTTSSPDSETPSQASPLVEASSQDSPVAFTQ
AASPPEETTPYLEEQESPQKDEEESQDRASSPEPQWVNGPGRDNSTVDEPTPESSPEASP
EPSLEASPEPSPEPTPEPSSDSMLPESEPEQQQEQLASPKDVDNEQSEPMEEAASQPVVD
TVTDTEGT
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacaatgagttgtactcattgaacgagtacaagccgccc
atctccaaggccaagatgacccagatcaccaagtcaggaatcaaggctataaaattctat
aagcatgttgtccagagtgtggagaagttcatacagaagtgcaaaccagaatacaaagtg
ccgggcctatacgtcatcgactcaattgtccgacagtcgcgacaccagtttgggacagag
aaggatgtcttcgctccgcgcttcagcaagaacatcattgcaacgttccagcatctctac
cgctgcccttcagatgataagagtaagatagtacgagtcctgaacctgtggcaaaagaat
gcagtcttcaagagtgacatcatccagcctctgttggacatggcagcagggattccccct
cccagtgtcacaccagtcatgcccagcagtgctgccccagtcaataacactacgcctggc
actccagctaccccggccactccagccaacatagtccagggtcttcctgattgggcttcc
cagattaccaacacagacactgtggctgctgtggcacagatcctacagagtccgcaggga
cagcagctgcagcagctggtacagagtctacagatgcagcaacagaagcctcagccgtcc
ctgctgcatgccttggatgctggcctggtggtgcagttacaagctctcacggctcaactc
acagctgccgctactgccaacagcctcaaccccctggagcagagggtctcctcttttaat
aagaaacttctgggtccttttgattttgggaatgattctgaacgtggtgaagaatctaaa
aaagactcctcatcatctcaactgcccatggtgtcggagcctatcaacagctccctcttc
catcagctggctgagcagctgcagcagcagaacctggagcagtttcagaagcagctttta
gagcaccagcagcaccaacagaaggcaatgagcatagaagggcaggacacgatctttggc
caagagaactctgtggcaactgctcagagcagcagccaagcacagcttccagagtcagag
aacaagttggatgactccatagacaaccaacagcaggacatggatctggatgagggtcca
gatgggatggaggaggagatctttgaagcagaggagaagaagattgtaagcacgcgctcc
agaacacgctcaaggtcacgctctaggtctcccaagaggagaaggtccaggtcccgctcc
ggctcacggaaacgtaaacaccgcaagcgctcgcgttcacgctccagagaccgcaagagg
aagtcatcgcgctcttactcaagtgaaagacgcgcccgagagcgagaaaaggagcggcag
aagaaaggactgcctcccatacgatctaaaacactaagtgtgtgcagcacaaccctgtgg
gttgggcaggtggacaaaaaggccactcagcaagacctcaccaacttatttgaagagttt
ggccagattgagtctattaacatgatccctcccagaggctgtgcctacatctgtatggtc
cacagacaggatgcgtaccgcgcccgccagaagctcagcaccggctcctttaagattggc
tccaaaattatcaagatcgcatgggctctgaacaagggggtaaagcaggagtacaagcag
ttttgggatgtggacctgggcgtcacttacataccgtgggagaaggtgaagctggatgac
ctggatggttttgctgaaggaggcatcattgaccaggagaccgttaatgatgagtgggag
gcagccaaaaacgctgagccagccaaggaagttacaaatcagccggtgagtgctgagact
acagctgcatcgaacacccagactgaaacctacaaccagcaggtcaccatgatgcctgta
cagtcatcgttatgtctcacccagctaccagtggcccaggctgttcccagtgcggtaggt
ttggtgcctcctgccttcaccatgggaataccaccaccaggttacgggcctccaccaccc
ttcataagagctggcttcaatacatcgcagcctcctcctggttttatgcaggcagcacag
actgcagccatggcttcagcaactacttctctagtgcagccttcagtggcaaccagccaa
gacgctgtcaaggattcaccgttcggcgctatgattcctccaaccagcactattcccggg
agcttcatggcctcagccatccctggagccagtatgttcaacccagtgggagtacaagct
cagcaagcaaccaatgagaaatcgggacagtctgcagagggtatggatgctgctgcagag
cttacactgcaaggcatgcagaatgcagtccgcagcggtatgggtctccttggcatgcac
cccacagcttccctcacccacccactgcatcagtctggtttggctgcacagaggatgcct
ggcctgctgcctctggatgtgcgacctaacctcctccaacccggggctgccgcccgcttc
ccgctcctcatgcagcagggccccgcccagcaggctgccggcctcctcgacagtgccctc
caggctcaagctcgtgccagggctcccttccctcagctggaccccttcaacagggccccc
aacctcaacaatgaaaatctatcgaagacagaaaatgagtcttcctctggggccgatgag
ggcaaagaccaggactaccgcttccctccgatggaaaagcagagcacaggcctgctgagg
acccctccaccagagcatagggagtccctgggaggtggtggcggagcaggaaatgctgga
ggaggcaggccccccttgctccagaccccagggactcagccagccagaacaagcctggtg
ggacgtctgcaggctcttgcaggcttcactccggataaccgctggaaccaggccagaggg
gactttgacgaacgagataacatgcgaggaggcctacaggccccagtcgggccaaaaggc
ttccaggaggagcgtcccactcctggacagaacttccccaaccgcttcgacagccgtcct
ggggcgacaggaggagcagccggagtttcaggaaatgctggcgctgttggggggccacag
gcctggaaccgtagtggtgctgccacagcgcctttcgacagtgagctacatcaagaccta
gatgagcgaagacgcccgtgggacaggcaaagagacagagatgaaagagattttgacttc
cggaaggagatgaatggtaaccgccacagccgagagagagagcgagaccgggagcgcgag
agggagagggagagggagagagaccgcgagcgaggccgagaccgagaccgccccagagag
catgaacgggacagagatcgcgacaaagagagagaccgtgagagggatcgtgaacgtggt
ggctggacgcctcttctccctctacctacacccctgcttccaactccacctctaaatact
aacctgagcctgaaccaaggcaaactgcttgcaccactcaaattaaaccctcagcttcag
ccacgattccagtcctccctcctgcctcaggctcagggcaagccctctctcctgggttct
cctgggaatcagccactgcctcaggttccagtcccatcacagagccaggcatctgagccc
gagcttgagcccgagtcagaaaccccaactccgtctgagacacctcaggcacagtcacca
ccctcggcccaatcacctgacctatcatctgacagcaagggtcagagcccactgactgag
gctcccactgagggcaagtcatcaccgcaacctgagaccctcccacaaacagaatcacca
tcccagctcacggcccagtccccctccaaaaccacttcttctccagacagtgagacgcca
agccaagcctcaccgctggttgaagcctcatcccaggactcacctgtggccttcacgcaa
gctgccagcccccctgaggagacgactccctatctggaggagcaggaaagcccacagaag
gatgaggaggagtcacaagatcgagcctcctcacccgaaccccaatgggtcaatggacct
gggagggacaatagcactgtggatgaacccacaccggagtcctcacccgaggcctcacct
gagccatccctagaggcctcccctgagccctctcctgagcccactccagaaccctcctcc
gactctatgctccccgaaagcgaaccggagcagcagcaggagcagcttgcctctcctaag
gacgtagacaatgaacagagtgagcccatggaggaagctgcgagtcagccagtggtagac
actgtcacagacactgaggggacataa
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integrated database retrieval system
