KEGG   Larimichthys crocea (large yellow croaker): 104919387
Entry
104919387         CDS       T04659                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lco04131]
    104919387 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lco04147]
    104919387 (copb2)
Membrane trafficking [BR:lco04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    104919387 (copb2)
Exosome [BR:lco04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   104919387 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_LRRK2 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 HEAT_GCN1
Other DBs
NCBI-GeneID: 104919387
NCBI-ProteinID: XP_010729697
LinkDB
Position
VII:complement(6317314..6328469)
AA seq 1190 aa
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMVISLYSGTVVVWNHETQTMVKTFELCDLPV
RVAKFVARKHWVIAGADDMLIRVFNYNTLERVHMFEAHADYIRCIAVHPTQPYILTSSDD
MLIKLWDWERKWSCSQVFEGHTHYVMEIVINPKDNNQFASASLDRTIKVWQLGSRTPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVTCVSFHPE
LPIILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCISGQPGSNSVAMGYDEGSIIIKLG
REEPAMSMDSSGKVMWAHHSEVQQANLKAMGETEIRDGERLPLGVKDMGSCEIYPQTIQH
SPNGRFVVVCGDGEYIIYTAVALRNKSFGSALEFVWAHDSSQYAVREGSSMVKIFKNFKQ
KKAFKPDFGAEGIFGGFLMGVRSNSGLAFYDWETAEMIRRIEIQPKHIFWSDSGELVCIA
TDESFFVLRYLAEKVAAAQESKEQMTEDGIEDAFEVLGEISEVVKTGVWVGDCFIYTSSL
NRLNYYVGGEIITIAHLDRTMYLLGYIPKDDRLYLGDKEHSIISYSLLLSVLEYQTAVMR
RDFSTADKVLPTIPKEQRIRVAHFLEKQGFKQQALAVSTDPEHKFELALQLGEVNIAYQL
ALEAESEQKWKQLAELATTKCQFNLAQECLHQAQDYGGLLLLATASGNTVMVGKLAEGAE
RDGKTNVAFLTYFLEGRLDKCLDILIKTDRLPEAAFLARTYLPSHVPRVVKLWKESLSKV
NQKAADALADPTQYSNLFPGLQQALLAEQYLKETHVGVRHAAEYPLIMPNEDRNVLEESA
GFLPKGEITEPEEVMKSMNETLVVAAVTQAVAAETAAVEEPIPPEPEIIDPVSTTEEEYI
PTAASTLPITVTEEHVEQAVLITKSEEASVSVDESTTESEMVQSSPMEDVKYSVETDVQD
ISPAVPTVSETSVTETTSETIMATEEPPSETVATEDVLVSTGLTVSIATEEKPVYEELET
EAPTIIDTAAEETLVTEELVSETVAVEELISFENTASPVLDVPVQVQTFPDLVLDPLLDP
LQDTIPVLKPVMAQEPEQEEQTTTLPVKPESNLEPDLLLQAEPEILSPAAAQTEGDMAEQ
EEGPEGAEEPAEDLEAELNEEALDDLDLDNFDLEDIDTSDVNLDEDFLSE
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgcctctgcggttggacatcaagcggaagctgacggctcggtcagaccgggtgaagagt
gtggatctgcaccccactgagccgtggatggtgataagcctctacagtggcactgtggtg
gtctggaaccatgagacacagacgatggtgaagacctttgagctgtgtgacctgcctgtc
agagtggccaagtttgtagccaggaagcactgggtcattgctggagcagatgatatgctg
atccgtgtgttcaattacaacactctggagcgagttcacatgtttgaggctcacgccgac
tacatccgctgcatcgctgtccacccgacacagccctacatcctcaccagcagcgatgat
atgttgatcaagctgtgggactgggagagaaagtggtcgtgcagccaagtgtttgaggga
cacactcactacgtcatggagattgtcatcaaccccaaagacaacaaccagtttgccagc
gcctctctggacagaactattaaggtgtggcagctgggctcaaggactcccaacttcact
ctggagggccacgagaagggggtcaactgtattgattactacagcgggggggacaaacca
tacctcatatcaggggctgatgaccgtctggtcaaaatctgggattatcagaacaaaacc
tgcgttcagactctggagggtcacgcccagaacgtgacctgcgtcagtttccatcctgag
ctgccaatcatcctcacgggctctgaggacgggactgttcgagtgtggcactccaacacc
tacaggctagaaaatacgctcaactatggcatggagagggtgtggtgtataagtggccag
cctggctccaacagtgtggctatgggctatgatgaaggcagcatcatcatcaagctgggt
cgggaggagccggccatgtctatggactccagcgggaaggtcatgtgggctcaccactcc
gaggtgcagcaagccaacctgaaggctatgggagagaccgagatcagagatggagagagg
ctgccgctcggtgtcaaagacatgggcagctgtgagatttacccccagactatccagcac
agccccaacgggagatttgtagtggtgtgcggagatggggagtatatcatttacaccgcc
gtggctctgaggaacaaaagcttcggctcagctcttgagtttgtctgggcgcatgactcc
tcacagtatgccgtcagggaaggcagcagtatggtgaaaatatttaagaactttaaacag
aagaaggctttcaaacctgactttggggctgaaggtatctttggtggcttcttaatggga
gtgaggtcaaacagtggtctggccttctacgactgggagactgcagaaatgatccgccgt
atcgagatccagcctaaacacatcttctggtctgactctggggagcttgtgtgcattgct
acagatgagtctttttttgtgctgcgctacctcgccgagaaggtggcagcagctcaggaa
tccaaggaacagatgacagaagatgggatagaggatgcatttgaggtgctgggggagatt
tcagaggtggtgaagacaggggtttgggtgggagactgcttcatctatacaagctctctt
aacagactaaactactatgttggaggagagatcatcaccattgctcatctggacaggacc
atgtatctgctgggctacatccccaaagacgatcgtctctacctcggagacaaggagcac
agcatcatcagctactccctgctgctttcagtgctggagtaccagacagctgtcatgagg
agggacttcagcacggctgataaggttctacccacgatccccaaagagcagaggatcagg
gtagcccactttttggagaaacagggcttcaagcagcaggccctggcggtgtccactgac
ccagaacacaagtttgagctggctctgcagctgggagaagtcaacatagcctaccaactg
gccctggaggcagagtctgagcagaaatggaagcagttggcagagcttgctactacaaag
tgccagtttaacttggcccaggagtgtctgcaccaagctcaggattatgggggattattg
ctgttggccactgcctcgggcaacaccgtcatggttggaaaattggccgagggagcagag
agggatgggaagaccaatgtggcctttctcacctatttcctggaaggaagattggacaaa
tgtctggacattctcatcaaaacagatcggttgccagaggctgcatttctggcaagaaca
tatctgcccagccatgtgccaagggtggtgaagctgtggaaggagagtctgtccaaggtc
aaccagaaggcagcagatgctctggctgaccccacgcagtacagcaacctgttccctggc
ctccagcaagccctgctagctgagcaatacctgaaggagactcacgttggggtcagacat
gctgcagagtacccactcatcatgccaaacgaggaccgtaatgttctggaggaatctgca
ggttttttgcccaaaggagaaatcactgagcccgaggaagtgatgaagagcatgaacgaa
acgctcgtggtagcagcagtaacacaggctgtagctgcagaaacagcagcagtggaggaa
cctattccaccagagccagagattattgatcctgtttcaacaacagaagaagaatacatt
ccaacagcagcatccactctgcccatcacagtaacagaagagcatgttgaacaagctgtt
ctcatcactaaatcagaggaggcttcagtctctgtagatgagtctaccacagagtcagag
atggtacagtccagccccatggaagatgtcaaatattcagttgagacagatgttcaggac
atttccccagctgtacctactgtctctgaaacatctgtgaccgagacaacatcagaaacc
atcatggcaacagaagaaccaccaagtgagacagtggcaacagaggatgtcctagttagc
actggtctgacagtaagcatagcaactgaagaaaagcctgtttatgaagaactggaaaca
gaagctccaaccatcatagatacagcagcagaggagactctggttactgaagaacttgtt
tcagaaacagtagcggtggaggagctcatctcctttgaaaacacagccagtccagtgctt
gatgtgcctgtccaagtccagacatttccagatctggtccttgatccactcctagacccg
cttcaggatacaattcctgtactgaagccagtcatggcacaagaacccgaacaggaggaa
caaaccacaacactcccagtaaagcctgagagcaacctggagcctgatttactgctacag
gctgagccagagattttatccccggcagcagctcaaacagagggggacatggcagagcag
gaggaaggtcctgagggagctgaggagccagcagaggaccttgaggcagagctgaacgag
gaggccttggatgatctggatttggacaattttgacctggaggatatcgacacctcagat
gtcaacctggacgaggatttcttgagcgaatag

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