Larimichthys crocea (large yellow croaker): 104919652
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Entry
104919652 CDS
T04659
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104919652
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104919652
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104919652
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104919652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
104919652
NCBI-ProteinID:
XP_010730018
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGHQYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGDIADVVG
PQGPPGPMGPPGEQGSRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAPGEAGEPGPAGSMG
PRGPPGPSGKPGSDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVAGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGPGGPSGPAGPAGERGEQGQPG
PSGFQGLPGPAGAPGESGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGSDGPKGAIGPAGAGGPQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGLVGPTGASGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGETGQKGEGGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPAGPAGSVGKDGPKGARGDAGPPGRQGDTGLRGPAGTPGEKGEPG
EDGPPGADGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAPGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDAGASGPAGPNGPKGPPGPAGPAGKDGSNGQAGPIGPPGPRGRSGEAGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGTQKNPARTCRDLKLCHPEWKSGDYFVDPNLGSTADAVKVFCNMETG
ETCVYPSIAKVPQKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAASAATVQLNFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTFGVLEDGCKK
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaggaggatgaccaggaggcaggtggctgcatccaggac
ggccatcagtataatgataaggatgtttggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggatcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacgattggcgccaagggccagaaaggtgaaccaggagatattgctgatgttgtagga
ccacaaggaccaccagggcctatgggacccccaggtgagcagggatcacgtggagaagct
ggcgctaagggtgataagggaaatcctggacctcgcggaagagatggtgagcctggcacc
cctggaaaccccggaccccccggcccacctggaccaccagggcttggagggaactttgct
gctcagatggctggaggtttcgatgagaaggcaggaggtgctcaaatgggtgtgatgcaa
ggaccaatgggacctatgggccctcgtggtccccctggaccaactggagctcctggacca
caaggattccagggtgcccctggagaggctggagagcctggtccagctggatcaatggga
cctcgtggaccacctggaccttctggaaaacctggaagcgatggtgaggctggcaaacct
ggaaaatctggtgagcgtggacctgcagggcctcagggagctcgtggcttccctggaact
cctggacttcctggaatcaaaggacacagaggtcaccctggtctggatggagctaaggga
gaaactggtgctgcaggagccaagggtgagtctggttctgccggagaaaacggtgcccct
ggaccgatgggcccacgtggtctgcctggtgagagaggacgttctggagctgctggagct
gcaggtgcccgtggaaatgatggtttgcctggtcctgctggtccacctgggcctgttggt
cctgctggagctcccggtttcccaggatccccaggagccaagggagaagctggtcctact
ggagcccgtggagctgaaggagcacagggaccccgcggagaggccggtaccccaggatct
cctggacctgccggagcatcgggtaaccccggtactgatggtattcccggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtgggccacct
ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtatt
cctggattcaaaggtgaagctggacccaaaggagagcttggccccgctggtcctcaaggt
gcccctggccctgccggtgaagaaggaaagagaggtgccagaggagagcctggagctgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccctggtgatcgcggtgttgctggtgctgccggg
cctaaaggagctactggagaccccggacgcacaggagagtctggcctccctggagccaga
ggtcttactggtcgtcccggagatgctggacctcaaggcaaagttggaccctctggtgct
gctggtgaggacggtcgccccggcccacctggtcctcagggagctcgtggacagccagga
gtgatgggattccctggaccaaaaggagccaatggcgaacctggaaaaccaggagagaag
ggtcttgtgggtcgtcctggactgagaggtctgcctggaaaagatggtgagactggacct
ggtggaccttctggccctgctggacctgctggagagagaggtgaacaaggacagcccgga
ccttctggcttccagggtctgcctggaccagctggtgcccctggagagtctggaaaacct
ggagaccagggagttcctggagagggcggagctcctggtgctgttggacctagaggagaa
cgtggtttccccggagagaggggtggtgctggtgctcagggtcttcagggacctcgtgga
cttcctggaacacccggaagtgatggacccaagggagccattggaccagctggtgctggt
ggaccccagggaccccctggcctgcagggtatgcccggagagagaggaactggtggtatc
ccaggacccaagggagacagaggtgacaacggacagaaaggacctgagggagctcctgga
aaggacggtgctagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggtgccaagggtgagactggacttgttggccctactggtgcttctggcgctcgtggtgct
cctggtgaccgtggtgaggttggtcctcctggtcctgctggctttgctggacctcctggt
gcagatggtcagcctggtgctaagggagagcttggtgagactggacagaagggagaaggt
ggtgctcccggacctcagggaccatctggagctcctggacccgtgggacctactggtgta
actggacctaaaggagcacgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggatctcctggccctaatggtaaccctggccctgctggtcctgct
ggaagcgttggtaaagatggaccaaagggtgctcgtggtgatgccggaccccccggaaga
cagggagacactggactccgtggacctgctggcacaccaggagagaagggagagcctgga
gaggatggaccacctggtgctgatggtccttcaggtcctcagggtctaggtggatctcgt
ggtattgttggtttgcctggacagcgtggagagagaggcttccctggtctccctggacct
tctggagagcctggtaaacaaggagcttctggttcttctggcgaccgtggacctcctgga
cctgttggaccccctggacttactggacctgctggagagactggaagagagggcacccct
ggatcagatggacctcctggtagagatggagctcctggagtcaagggagagcgtggtaac
accggccctgctggcgcccctggagctcctggtgcccctggtgcccccggacctgttgga
ccccttggcaagcagggagacagaggagagtctggtgctcaaggacctgcaggaccatct
ggacccgctggcgctagaggaatggctggaccccaaggaccacgtggagacaagggagag
gctggtgagactggagagagaggacagaagggtcaccgtggattcactggtctgcagggt
ctgcccggacctcccggtcccgctggagatgctggagcttccggacctgcaggaccaaat
ggacccaagggaccacctggaccagctggacctgcaggcaaagacggatcaaatggacag
gctggccccattggaccccctggacctcgtggacgttctggagaagctggtcctgctggt
cctcctggtaacgctggacctcctggtcctcctggtcctcccggtcctggcatcgacatg
tctgccttcgccggtctgggtcagactgagaagtcccctgatcctcttaggtacatgagg
gctgatgaggcctccagctccctgagacagcacgacgtggaggtcgactccacactcaag
tccctcaacaaccagatcgagaacctgcgcagccctgacggcacccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtgactactttgtt
gatcccaaccttggcagcacagccgatgccgtcaaggtgttctgtaacatggagactgga
gagacctgtgtctacccaagcattgccaaggtgccacagaagaactggtggaccagcaaa
agcaaggaccgcaaacatatctggttcggagagaccatgaatggaggattccacttcagc
tacgctcaggatggtcctgctgccagcgctgccactgtccagctgaatttcttgaggctt
ctgtccactgaagcatcccagaacctcacttaccactgcaagaacagcgttgcctacatg
gatcaggccacaggcaacctgaagaaggctttgctgctgcagggctccaacgatgtggag
atccgggcagagggcaacagtcgcttcacattcggcgtgttggaggatggctgcaagaaa
catacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagtttggtgtggat
gtaggcgcagtctgcttcttgtaa
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