Larimichthys crocea (large yellow croaker): 104919729
Help
Entry
104919729 CDS
T04659
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2 isoform X2
KO
K12879
THO complex subunit 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104919729 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
104919729 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104919729 (thoc2)
03041 Spliceosome [BR:
lco03041
]
104919729 (thoc2)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104919729 (thoc2)
Spliceosome [BR:
lco03041
]
Complex C
Other components
EJC/TREX
104919729 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104919729 (thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
104919729
NCBI-ProteinID:
XP_010730102
LinkDB
All DBs
Position
XXII:17513592..17535926
Genome browser
AA seq
1554 aa
AA seq
DB search
MAKLILPGEWIKNWEKSGKHEFVQLCKNLTEKTDHGNELRDIQAALYELCWQVVLGSLKL
DLVASVLGDMMELRDDMPSILADVFSILDLETGALEEKNKRDHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPLDAAIVEEHKRDISE
AKQIARKLVMVVLPSEKSEDKEKDKEKEEEKNEKPPDNQKLGLLEALLRIGDWHHAQSIM
DQMPSFYATSHKAIALALCQLVHLTVEPLYRRAGLPKGARGCVMHPLRNKRAPRPTESFE
DLRRDTFSMLGYLGPHLSHDPILFAKVVRLGKAFMKEHQSDGRADVKDKMDTLLSCFLSV
ADQVLLPSLSLMECNACMSEEVWGLFKLFPYQHRYRLYGQWKNETYSSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDVLLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHAAYEREVNKL
KAQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKSQKVHMVPENEFHHKEQPARSATPASQQNGPG
STGKPATSTNKTDEGTSEDGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAAK
ERDDKEKSGKEKKEKKEKTPGSTPETKAENRREKQRDERAGKEERAAREGKEKTPKADRE
KVKAEEKSSKDDKAKAGNGEPVEPSRERDAIKEPKSKEKGDRSVVAGSLKSPVPRSESAE
SERDHKRRKLDSHSSPSHSSSVKDNSNEPKESTSKHHLNYNSVARSKSREREMEKKDSDN
TQGRSKEKKEEKERKDRKRDHAVNDREASQESKRKKDENGTNSSKNSPSSDSPLSAEKEK
SKRSKSSSKEKAESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEEKKQYP
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacttatcctccctggtgaatggatcaaaaactgggaaaaatcaggaaaacac
gaatttgtacaactctgcaaaaaccttacagagaaaacagatcatggaaatgagcttaga
gatatacaggccgccttatacgagctctgctggcaagttgtactggggagcctcaagttg
gatctcgtcgccagcgtccttggggacatgatggaactccgagatgacatgccatcgatt
ttagcagatgtgttcagtatactagatttagagaccggtgcgctggaagaaaaaaacaaa
cgagaccattacacacaactggttggagcatgtttgttttttgttccagaggccatcctg
aaagagcggctggacccagaaactcttgaatctcttggacttataaaacaagcccatcag
ttcaaccagaagattgtaaaaatcaagacaaagctattttacaagcaacagaagtttaac
ttgctaagggaggagaacgagggctacgccaaactcatcaccgagcttggccaggacctc
tcgggcaacatcaccagccatcttgtactggagagcatcaagtccctcataggatgtttc
aacttggacccaaatcgtgttttggacataatcctggaagtgtatgagagtcgatctgac
caagatgaattcttcctgtctctcatcaagtcctacatgtgtgaaccactcaccctttgt
cacatccttggctttaagttcaaattctaccaggagcccaatgaggaaacccccaagtca
ctttaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccactagatgccgccatcgtagaggaacacaaacgagacatctcagag
gccaagcagatcgctcgcaagctggtcatggttgtgttgccctcagagaaaagtgaagac
aaggagaaggacaaagaaaaggaggaggagaagaatgaaaagccacctgataaccagaag
cttggtctgttggaagcgctactcagaatcggagactggcaccacgcccagagtattatg
gaccagatgccttccttctatgctacttctcacaaggccatcgcgctggcactctgccag
cttgtgcacctgactgtggagccgctttacagaagggctggcctcccgaaaggagcaagg
ggatgtgtgatgcatccactaaggaacaagcgagcccctcggcccacagagagcttcgag
gacctacgcagggacacattcagcatgctcggctacctgggacctcacctctcccatgac
ccgatcctcttcgccaaggttgtgcgcctggggaaggccttcatgaaagagcaccaaagt
gacggcagagcggatgtcaaagacaagatggatacactattgagttgtttcctgagcgtt
gcggaccaggtgcttctcccttctctctctctgatggagtgtaacgcttgcatgtctgag
gaagtgtggggcctcttcaagctctttccctaccagcacaggtaccggttatatggacag
tggaagaatgagacctattccagccatccgctgctggttaaagtcaaagctcaaactgtg
gaaagagccaaatacattatgaagcggttgaccaaagagaatgtgaaacaatctggaagg
cagattggcaaactgagccatagcaatccgaccatcctctttgattatatgctgtctcag
atccaatggtacgacaacctcatcgttccagtggtggactccttgaaatacctcacatcc
ctcaactatgatgtcttggcctattgcatcatcgaggctctggccaaccccgaaaaggag
aagatgaagcatgacgacaccaccatttcctcgtggcttcagagtctggcaagtctgtgc
ggagccgttttcagaaaatacccgattgagctggctggccttctccagtatgtcaccaat
cagctaaaagcaggaaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gccggcatcgagatcacagacgagatgacatcagagcagttagaggccatgaccggagga
gagcagctcaaagctgagggtggatacttcggccagatcaggaacactaagaagtcatca
cagcgtctgaaggatgtgctgctggatcacgaattggctttgccactgtgtctgctcatg
gcccagcaacgaaatggcgtggttttcttagagggtggagagaaacaccttaaacttgtt
ggccacctctatgaccagtgtcatgacacgttggtgcagtttggtggttttcttgcctcc
aacctcagcacagaggattacatcaagcgcgttccctccatcgacatcctttgcaaccag
ttccacactccacatgatgccgccttcttcctctctcggccaatgtacgcccatcagatt
ctgtctaagtacgatgaactgaagaaagcggagaaaggcaaccgacagcagcagaaggta
cacaagtatgtggctgcctgtgagcaggtgatgacaccggtgcacgaggccgtggtgtcc
ctccatccggccagagtctgggatgaccttcgccctcagttctatgccaccttctggtcc
ctcaccatgtatgatctcgccgttccacatgccgcatacgagcgcgaggtcaacaagctc
aaggcacagatcaaggccatcgaggagaacccggagatacctttgaataagaaaaagaag
gagaaggaacgctgcactgccctgcaggaaaaactgcaggaggaggaaaagaagcagctg
gagcacgtccagagggttctccaccgcctcaaactggagaaagacaactggttgttggcc
aaatccacaaagaatgagaccataacgaagttcctgcagctctgtctgttccctcgctgc
atcttctcttccatcgatgccgtgtactgcgcccgctttgtcgagcttgtccaccagcag
aagacacccaacttctgcaccctcctgtgctacgacagggtgttctccgctatcatctac
actgtggccagctgcacggaaaacgagtctcaccgctacgggcgcttcctctgctgcatg
ctggagacggtgacccgttggcacagcgaccgtgcaatctatgagaaggagtgcgtcaat
tatcccggcttcctgaccatcttcagagccacaggcttcgacggaggcaacaaagcggac
cagctggattatgaaaacttcaggcatgtggtgcacaagtggcactacatgctgactaaa
gcttcggttcactgtctggaaaccggagattacacccacatccggaatattctcatcgtg
ctcaccaagatcctgccctgctaccccaaggtcctgaacctgggccaagcgctggagtgc
cgcgtccacaagatctgcctcgaggaaaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcgcttgaaaagccagaaggtgcacatggtccctgagaatgagttt
caccacaaggagcagccagcgcgcagtgccacccctgccagtcaacagaacggccccggc
agcacaggcaagcccgccaccagcacgaacaagacagacgaggggacgtcagaggatggt
gatcggggcaaagataaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcagccaaagtgaccaccagcaacgggaacggtgctctcaacagcaccaaagccgctaaa
gaacgggatgacaaagagaagagcgggaaggagaaaaaagagaagaaggaaaagacaccg
ggcagcactcctgagacaaaggcggagaaccgtcgggagaagcagagagacgagagagca
gggaaggaggagcgggcggcacgtgagggtaaggagaagacccccaaggcagacagggag
aaagtgaaggccgaggagaagagcagcaaagacgacaaggccaaagccggcaacggggag
cccgtagagccgtccagggagcgcgatgccatcaaggagcccaagagcaaggagaaagga
gacaggagcgttgtggccggatccctcaagtcaccagttcccagatcggagtcagccgaa
tctgagagggatcacaaaagacgaaagctcgacagtcactcttctccgtcccactcctcg
tctgttaaggacaatagcaacgaacccaaggagtctacatccaagcaccacctcaactac
aattcagtagccagatccaagagcagagagagggagatggagaagaaagattcagacaac
acacaaggccgatccaaagagaagaaggaagagaaggaacggaaagacaggaaaagagac
cacgctgtcaacgaccgcgaggcgagccaagagtccaaacgtaaaaaggatgagaacgga
accaattcctctaaaaacagtccttccagtgactccccgctttcagctgaaaaagagaag
agcaaaagatccaaatcttccagcaaagagaaggcagagtctgtgaaacctgagcgaacg
tcctccggaggcaaaaaggagtccagacacgataaagagaaatctgaaaagaaagagaag
cgggacagcagcggaggaaaggaagagaaaaagcaatatccttaa
DBGET
integrated database retrieval system
