Larimichthys crocea (large yellow croaker): 104919954
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Entry
104919954 CDS
T04659
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104919954
04518 Integrin signaling
104919954
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104919954
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104919954
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104919954
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
104919954
NCBI-ProteinID:
XP_019114384
LinkDB
All DBs
Position
VI:14317532..14364155
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQNDDLEEDASSCIQDGQRYSDKDVWKPEPCRICV
CDTGIVLCDEIVCEELKDCPKPEIPFGECCPICAADPSPPIGTPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGESGAPGDNGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGPHGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGGAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEGGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGVTGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGGGAQGPPGLQGMPGERGSAGIPGPKGDRGDIGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTSGEK
GDAGEDGPPGPPGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDIGNTGPSGAPGAPGAPGAG
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPAGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVLPRPSSIPRKNWWSSKSKDRKHIWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaactcaagtctgtcta
ttagccgttgtgagatgtcagaacgacgacctggaggaggatgcttctagctgtatacaa
gatggacagcgttatagcgacaaagacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaatcgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgccgctgacccatctccaccc
attggaacacctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggaccccgtggagca
agaggagacaagggagagaagggaagccctggtccccgcggcagagatggtgagcctggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgatgaaaaagctggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccactgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaaagt
ggccccatgggtccccgtggcccccctggaccttctggaaagcctggagatgatggtgag
gctggaaaacctggcaaatcaggcgagcgtggacctgccggacctcagggagcccgtgga
ttcccaggaactcctggccttcctggaatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttgggtctaagggtgagtcgggtgctcctggagat
aatggcgctcctggaccaatgggaccccgtggtctgcccggtgagagaggccgtcctgga
cccagtggagttgctggcgcacgtggaaatgatggtttgcccggtcctgctggtccccca
ggccctgtcggtccctctggagctccaggcttccctggctctcctggctcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actcctggatcatctggaccttctggagcttctggaaaccctggtactgatggtattcct
ggatccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtggacctcccgggcctcagggagcaactggacccctcggacccaaaggaacatctgga
gacccaggtattccaggattcaagggagaggctggacccaaaggagaaattggaccagct
ggtcttcagggacctcatggcccacaaggagaagaaggaaagagaggacccaggggtgag
cctggtgctgctggaccacttggacctcctggagagagaggatcccccggtaaccgtggt
ttccctggacaagacggtctggctggtcccaagggagcccctggtgagcgtggacccgct
ggtgccagtggtcccaagggtgccaacggtgaccctggtcgccctggggagcctggtctg
cctggtgccagaggtctgactggacgccctggtgacgccggtcctcaaggcaaagttgga
ccttctggaggtgctggtgaggatggtcgcccaggaccccctggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagggtggcaag
tctggtgagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatgga
gaaactggtgctgctggaccccctggccctgctggccctgctggagagagaggagagcaa
ggacagcccggtccctcaggtttccagggtcttcctggacctcctggcccccctggtgag
ggtggcaagcctggtgaccagggtgttcctggagaggctggagctgctggtgttactgga
cccagaggagagcgtggtttccctggagagagaggagctgctggcccacagggtctgcag
ggacctcgcggtctgcctggaactcctggaactgacggacccaagggagccatcggacct
gctggtggtggtggagctcagggaccccccggtctgcagggtatgcctggagagagagga
tctgctggcattcctggacccaaaggagacagaggtgacattggagagaaaggacctgaa
ggtgcttctggcaaagatggtgctcgaggtctcactggtcccattggtcctcctggacct
tctggtcccaatggcgagaagggtgaatctggtcctgctggtccttctggagctcctggg
acccgtggtgctcctggtgacaggggagagactggacctcctgggcctgctggatttgct
ggaccccctggtgctgacggtcagcctggaatcaagggagagcagggagaatctggacag
aagggtgatgctggtgcccctggaccccaaggaccctctggtgcccctggacctgcaggt
cctacaggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgctact
ggtttccctggtgctgctggtcgcgtcggaccccctggtcccaatggtaatcctggacct
gctggtcctgccggccctcctggtaaagatggacccaagggtgtgaggggagatggtgga
cccccaggcagacagggtgatgctgggctccgtggacctgctgggactagtggagagaag
ggagatgctggagaggatggtccccctggtcctccaggaccttcaggtcctcagggtttg
ggtggtcagcgtggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggt
ctgcctggaccctctggtgagcccggaaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgtcggaccccctggactcactggacctgcaggagagcctggcaga
gagggcaaccctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gatattggtaacaccggtccttctggtgctcctggtgctcctggcgctcctggtgctggt
ggcccagttggtcccactggcaaacagggagacagaggagagtctggtgctcaaggacct
gctggacctccaggacctgctggagccagaggaatgcctggaccccaaggaccccgtggt
gacaagggtgagggtggagagtctggtgagagaggacagaagggacacagaggcttcact
ggtctgcagggtctgcctggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggacctcctggacccgttggccctgctggaaaggatggt
ggaaacggtctgccgggacccattggacccccaggacctcgtggtcgcagtggagagacc
ggtccctctggtcccgccggaaaccctggacctcccggtcctcctggtcccccaggccct
ggcattgacatgtctgccttcgctggtttgggtcagactgaaaagggccctgatcctctc
aggtacatgagggctgaccaggcttctggaaaccttcgtcaacatgatgctgaggtcgac
gctacactcaagtctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aagaacccagctcgcacctgcagagacctgaaactctgccaccctgactggaagagcgga
gagtactggattgatcccaatcagggctgcaccgtcgatgcaattaaggtcttctgcaac
atggagactggagagtcctgcgtcctccccaggccttccagcatccctcgcaagaattgg
tggtccagcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggagga
ttccacttcagctatggtgatgacagcctggcacccaacactgctgccattcagatgact
ttcctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggatgcctcaacaggtaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatatagatcgcagaag
acctctcgtctgcccatcgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagtcgaagtcggggcagtctgcttcttgtaa
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