Larimichthys crocea (large yellow croaker): 104920004
Help
Entry
104920004 CDS
T04659
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104920004
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104920004
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104920004
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104920004
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104920004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
104920004
NCBI-ProteinID:
XP_019120969
LinkDB
All DBs
Position
I:29323245..29447848
Genome browser
AA seq
1266 aa
AA seq
DB search
MDLASQAHALVVLLTCMVLLCWAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQYLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFKDSELEVSVPENAPMGTSVAQLHATDADLGSNAQIHFAFSNQISASTKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPTIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDTDAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFSIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNLSQ
TPEQSFNSPPPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLSFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSAPTTTTINTMPSFGFQQSFARGAKANMSSMGVMDGRH
TLGRSVPKKDELDKGVNRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQQTTGGGSSSF
LHEHQL
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtcaggctcatgcgctggtggtcttgctcacctgtatggtcttgcta
tgctgggcccaggagagggactacacggtgaaggaggagcagccagagaacgttcgcatc
gggaacctgcgcaaggacctggacctcaaccttgaccccaacatcaggctatcctcaccg
ctgcagttcaagcctgtgtacaagacaggtgacgtgcctttggtgagggtggaggccaac
acaggggagatctttaccaccaaccacagaattgaccgggagaagctgtgctctggggtc
ttcgctgagaaacgctgcttctatgagattgaggtggccgtgctacccgatgagatcttc
cgattggtcaagatccgcttcctgatcgaggatgtaaatgacaacgcaccacttttccag
tccactgtaataaacatctccatccctgagaacacagccatcaacacccgatacccggtg
ccctcagcatttgaccctgacgtaggaatcaatgggatccaacattatgaactggtcaag
agcgtcagcgagtttggcttagacatcattgagactcctgaaggtgacaagtggccgcaa
cttattgttcagcagtacctggatcgtgagcagaaggacacctttgtcatgaagataaag
gtggaggatggtggcaaccctcccaagtccagcacagccattctccaagtcaccatctcc
gatgtcaatgacaatcgtcccatcttcaaagacagtgagctggaggtttcagtaccagag
aatgcccccatggggacatcggttgctcagcttcatgccacggatgcagatctgggttcc
aatgcgcagatccacttcgccttcagcaaccagatctctgcctcaactaaacgtcatttt
gccatcgacagttccacaggactgatcactgtgaaacagccactggacagggaggtaact
cccgttcataaactcatcgtccttgccagcgatggtagctccaccccctccagagccaca
gtgattgttaatgtaacagatgttaatgacaatgttcccaccatagacactcgctacatt
atcaacctggttaatgggactgttctactgtctgagaatgcacctctcaacaccaaaata
gccctaattactgttactgacaaggatgcagatctttatggcaaagtagcttgctacact
gaccacgatgttccttttcgtttgaagcctgtctttaatgatcagttcttactagagaca
gctgcccccctagattatgagacgactcgagaatatgcaattaagatagtggcttcggat
aggggaacgcctcctttgaacacttcagcaatggttttaattaaaatcaaggatgagaat
gacaatgcgcccattttcccccagccagaaatccaactttccataccagaaaacaatgac
ccctctacacagttaataaaaatcagcgccactgacgcagacagcggacataatgctgaa
attatttattctcttggccctgatgcacctgatgggtttaacatagacagacggtcagga
atcctctcagttggcaaacgactggacagagagaagcaggagaggtactcattcactgtc
atagcgagggacaatggctccacgtccctgcagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccccgagtacaacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagtgacggacacagatgcggga
gataacgctgttataaccctgtccattttgaatgggaaagataatttcatcatcgaccct
caaactggtgtgatcaaacccaatatcacctttgacagggagcagcaaagctcctacaca
tttatggtcaaggcagttgatggagggcaacctccaagctcctcctatgccaaggttact
atcaatgtagtggatgtgaatgacaatcgtcctgtgttcgtcatcccatcctccaactac
tcatatgacctagtgcgaaccaccaccacccctggtgctgtcgtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagcagcatcatc
atcacatctagggtctccccacgaggtctattttccatcgacaaaacaacgggtaacata
acactacaggagaaaatagtggcagctgatcaggggctgcataggctggtagtcaaggtc
aaagatctaggccagcctgagtcattacatgcaattgcacttattcacttgtttgtcaat
gacactgtgtcaaatgctaccttcatccaagagcagctacgaaaaagcatggagacacct
ttggaccgtaacataggggacagtgaggtaacacctcaagccaatggatatgtgattgtt
gtcatagctatcatagcagggaccatgactgtgatcttggtgatttttgtgactgccttg
gtgcggtgtcggcagacacccagacacaaagtggtacaaaagggcaagcagagtggcgag
tgggtgtcacccaaccaagaaaaccgtcagatcaagaagaagaagaagagaaagaagcga
tctcccaagagcctcctcctgaactttgtgaccattgatgaatccaagcctgacgacccc
acccatgagcatgttaatggtacactggatctccctgtggagctagaggagcaaaccatg
ggaaagtacaactgggccaccacgcccaccacctttaaacccgacagcccagatttagcc
aagcattacaagtcagcgtcccctcagcctacatttcaaatcaaaccggagactccagtg
gccccaaagaaacaccatgtgatccaggagctccccttggacaacacgttcgtggtgggc
tgtgactcactctccaagtgctcatcgactagctccgacccatacagtgtttcagagtgc
agctgtcaggggggattcaagactgcagggcaaatcaccacccgacagaacctgagccag
acaccggagcagtcttttaactcaccgccccccatttgtcctcataaggaggcctgtcaa
cttggcaagataacctctgtgaatacccagcgccgtgtgacgttccatctcccagacggt
tcccaggagagctgcagtgacagcgggctgggagacccagagcctagcagcacggccagc
accacccagcctcttcccctcagcttcccccaggaggagtactatgagcaaacatcacct
aacagccgcactgagggagatggaaactcagaccctgaatctaccatcgaggtgaacctg
cagaaagccttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tccgacagctgctggatgcccccagccttggcccagttccaggggccaggtagcaacagc
cccacctctgcccctactaccaccaccatcaatacaatgccctcttttggcttccagcag
agctttgcccggggagccaaagctaacatgagcagcatgggggtcatggatggtcgccat
accctgggcaggtctgtgcccaaaaaagatgaactggacaaaggtgtcaaccggccgcag
ttctacaacaccctggatagacactgcagtagtaagaaggaggaccccgtcaaggtcatc
cccctggctagcttctcctcccccgggcagcagaccaccggtgggggaagcagctctttc
ttacatgagcaccagctgtaa
DBGET
integrated database retrieval system
