Larimichthys crocea (large yellow croaker): 104920013
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Entry
104920013 CDS
T04659
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104920013 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104920013 (tgfbrap1)
Membrane trafficking [BR:
lco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104920013 (tgfbrap1)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
DUF7742
TPR-S
SIKE
Motif
Other DBs
NCBI-GeneID:
104920013
NCBI-ProteinID:
XP_010730466
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Position
VIII:26106031..26117962
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AA seq
871 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYMGTNDCFIHHFLLDEVTSSKGKL
TYSAQKLLHKYLGLKKPVAELRAASALERLIVLCDAIVFLVDMVTLETVPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMGVLSSKRRTVQIYMVYEDRVQLVKEVTTPEQPCAVSLDG
YFLCLALATQYMILNYNTGASQDLFPYNSEERRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVSFPYVVALDERFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALILTEGAQRNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLRCKRFLISYLGEVRSTEVANGCREDVDTALLKLYAEQDHDSLLDLLASENACLLA
DSIPWLEKYHKYFALGLLYHYNGQDSAALQLWIRVVDGDLQDSTRSDLYDYIVDFLSSCS
SLDLVWKYADWALRKDPTIGVHIFTKRPGSRDLSEMNPGDVITYLEKHSQALLLYLEHLV
LERKTQKEKFHTHLAVLYLEKVLSFLSESPTDEERLTRARERLQALLRESNLYRVQYLLG
KTENCEQLLLERATLHGKLEEHDKALHILVHKLRDFPSAEAYCIWASSSRDSAYQQQLFH
LLLGVYLDGNQTAGGGSGDLEMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPFLGRA
VQASMHACRTSRIALGLSHSENLQLLHDRLKERKKPIFVSDKKGCHLCHNTFSEPNVVCL
PGGVPVHTHCVAQRVRDSPTKRQLTNSSNHT
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagctagtccccgctgtggagcgagatctcctcatgggcgac
aaggctcgcatcaacatcgagtgcattgaatgttgcggaaagcacctgtacatgggtacc
aatgactgcttcatccaccacttccttctggacgaggtcacatcctccaaagggaaattg
acttactcagctcagaagctgctgcacaaatatctgggccttaagaaaccggttgccgag
ctgcgtgccgcctccgctttggagcgtctgatagtgctctgcgatgcaatagtgttcctc
gttgacatggtgacactggagactgtgccctcggcagcaggaggtggtgccaagatcaga
ggtgtgacggcgttctgcattaatgagaacccggtgaacggtgacccgttctgtgtggaa
atgggcgtgctctcctccaagcggcggacagtgcagatttacatggtgtatgaggaccga
gtgcagctggtcaaagaggtgaccacgcctgagcagccctgcgccgtcagtcttgatggt
tacttcttgtgcctggccctcgctacacagtacatgattctgaactacaacacaggagcc
tcccaagacctcttcccgtacaacagcgaggagaggagacccattgtgaagaggatcggc
agggaggagttcctcttagcagcccctggtggcctgggaatgttcgccaacgcagaagga
gtatctcagcgggctccagtcaactggtcagagagtgtgatcggtgccgctgtgtctttt
ccatacgtggtggctttggacgagcgcttcatcaccatccacagcatgttggaccaacag
ctgaaacagaccctttcattcagggatgggcacattctgcaagactttgaaggaaaggtc
atccttgcgtccacgaaggcagtctatgtcctggtacccctgccgctggagagacagatc
caagacttactggccagtcacagagtggaggaggcgctcatcctcaccgagggagcacag
agaaatattcccaaagataagttccagattttgcacaaaagaattctccagcaggcaggt
ttcattcagtttggacagcttcagtttctagaagcaaaagagcacttcaggaagggtcag
ctggatgtgcgggagctgatatctctctacccgttgctgttgccagcttcgtcttcattc
acacgctgccaccctcctctccacgagtttgccgatctcaaccacctggcacagggcgac
caggaaaaagtgctgcgatgcaagaggtttctcatcagttatttgggagaggtacgaagc
acagaggtggccaatggctgcagagaggacgtggacactgcactgttaaagctgtatgct
gagcaggatcatgacagccttctagacctgctagcatcagaaaacgcctgcctactagca
gacagcatcccatggctggagaaataccacaaatattttgcactcgggctgctgtatcat
tataatggtcaggattcagcagcactgcagttgtggattcgagtggtagatggcgatctg
caggactccacgagatctgacctttatgactacattgtggactttctaagctcctgctcc
agcctggacctcgtgtggaagtatgcagactgggccctgcggaaggatcccacgataggt
gtccacatcttcacaaagaggcctggcagtagagatctatcagaaatgaaccctggcgat
gtcatcacttacctggaaaagcacagccaggcgctgcttctctacttggaacacctggtg
ctggagagaaagacacagaaagaaaagttccacacacacctggctgtgttgtacttggag
aaggtcttatcatttctgtcggagtcaccgacagacgaagagcggctcaccagagcaaga
gagaggctgcaagccctgctcagggagtccaatctataccgtgtacagtatcttttaggt
aagacggagaactgtgaacaactgctgctagagcgtgcaacactacatggaaaactggag
gagcatgataaagcactgcacatattggtgcacaagctcagagacttcccatccgcagaa
gcttactgtatatgggcctcatcgagtcgggattctgcttaccaacaacagctctttcac
ctgctcttgggggtgtatctagacgggaaccagacagcaggaggtggcagcggagaccta
gagatggcagcagtggacctcctcaataggcacggcgaggttttcgatgcggtccgggtc
ctgcgcatgcttccagagggctggtcactgcagctgctgcgacccttcctgggtcgagct
gtccaggccagcatgcacgcctgccgcacctcacggatcgctctggggctgtcccactct
gaaaatcttcaactgctgcatgacaggctgaaagaacggaagaaaccaatctttgtgtct
gacaaaaagggatgccacctgtgtcacaacaccttcagtgagcctaacgtggtgtgtctg
ccaggtggagtgcctgtccacacccattgtgtcgcccagagagtaagagactctcccacg
aagagacagttaactaatagcagtaaccatacgtga
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