Larimichthys crocea (large yellow croaker): 104920026
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Entry
104920026 CDS
T04659
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104920026
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104920026
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104920026
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104920026
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104920026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
He_PIG
Syndecan
Motif
Other DBs
NCBI-GeneID:
104920026
NCBI-ProteinID:
XP_019133723
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Position
XXII:15874657..15954853
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AA seq
1190 aa
AA seq
DB search
MELNLRVVLFWVLVLHCGSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSDRNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVTDANDN
APKFEKSTYEAEVLENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPKLLRIDRST
GIIYVKGRPDREEINSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERLKDYIVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPTLFEVDFA
EENQPGEKVLDVTASDADSGTNAELLYNIVADSSIKGLFEIDQNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDVDQGENAHVHLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPARS
SYVGVTINVLDENDNDPVVTKPSNSSFRRLSPLASPDSHVEVVEAEDLDSGPNAELVFSI
AGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQAPKNAKGKRGRKGKPQKSPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQVVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNNKQHPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTTECSELGHSDACWMPGHPSPVRKTRNLPKLSTFVPYQERGSLGRLANGSARLGGEEHR
SRLPPSRSAYSSSGHDASQDCPLEEMPLSVASEFPPTSPAAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaatttacgagtagtgctgttttgggtcctcgtgctgcactgtggttctgct
gaaggcagcatcctgtaccgggtccaggaagagcagcctcccaacactctgattggtagt
ctggcagcagaccagggcctgccagactcgggtcatctctacaagctggaggtgggtgcc
ccttaccttcgtgtcgatggaaagacgggagacattttcaccaccgaaattcccatagac
agagagaccctgagggactgccgatccctggccaagggtaagccctgctacctggagttt
gaagtatcagtgacagatctgatacaaaaccagagcccacgacttattgaaggacgcatt
gaagtacaggacatcaatgacaacactccacaatttccctcttctgtgctcaccatctcc
gtccccgagaacacaatcatgggggcactcttctccatacctctagctacagacagggac
tcagacaggaatggggtggcggattacgctctgactgcagggccagatgcagcaacccta
tttggcttacaggtggctgatgacaggggagggaagcttccacagctcattgtactgggc
aacctagatcgtgagttaaaggattcctatgacctcaccatcaaggcggtggatggagga
aaccctcagcgctacagcagtgctttgctgagagtcgtagtcaccgatgccaatgataac
gctccgaagtttgagaagtctacgtatgaagcagaagtgttggaaaacagtccagtgggg
cactctgtattgcaggtcaaagcaaatgactctgacatgggccccaatggagaaattgag
tacacccttcaccaggcggtagacccagtgccgaaactcttgcgaattgatcgctccact
ggcattatctatgtcaaaggacgaccggacagggaggaaatcaacagcttgtccttctat
gtggtggcgagggataagggtcctcaacctaaaagctccaagacatttgtaaccattgag
gtgactgaccaaaatgacaatgctccagctgtagagatccgtggaattggccttgtgaca
cacagtgaaggagtggctaacatttcagaggatatgccagtgggaacagccgtggctttg
gtgcaagtgtctgacaaggatgagggagagaatgctgtggtcacttgtgtggtcgccggt
gatgtgcccttccagctccgccctgccagcgactcatccagtgacaataagagaaagtat
ttcctacagaccaccactcctcttgactatgaaaggctcaaggattacatagtagagatt
gtggctgtggattctggaaatccagcactctctagtacaaactctttgaaggtgcaggtg
actgatgtaaatgataattccccaatattctcaccaaccttgtttgaggtagattttgct
gaagaaaaccaaccaggggagaaggttttggatgttacagcttcagatgctgacagcggc
actaatgcagaactcctgtataatattgtggctgactcatccatcaaaggtctgtttgag
attgaccaaaatactggagaagtaagagcccgaagcccgcttgaccgtgagcataaagaa
cgctatgagttccgggtcaccgcagcagataaagggtcacctgttcataaaggaacagca
actgttgtagtaaaagtcctcgaccgtaatgacaatgaccccaagttcatgcttagtggc
tacagcttttcagttttggaaaatatgcctcccctcagtccagttggcatggtgacagtc
ctggatgtggaccaaggtgaaaatgctcatgttcacctctctgtagagcctgatggaggg
aagtttgtcgttcaaaatggaacaggcaccattctctcaagcatctcgtttgacagggag
aaggaaagcagctatactttccgtctaaaagccgtggatggaggggagccagccaggtct
tcatatgtgggcgttaccatcaatgtcctggatgaaaatgacaatgacccagttgtcacc
aagccctccaattcctcattcaggcgcttatcacctctagcttccccggatagccatgtt
gaggtagtggaagctgaagacctagatagtgggcctaatgcagagctagtctttagtatt
gctggcggaaacccttaccagttatttcgcatctccccctccagtggcgagattactcta
gcaaaagaaatgacccgaaaacacggtggactacatcgccttgtggtgcgggtgagtgac
agggggaagcctgcacgtcatgccactgccctggtccacatctatgtcaatgaaacaatt
tcaaatgtcagcttagtggaggctctagttggacacagtctttacactccactagacagg
gacattgccggtgatcctgacaatggttttgctgcacagcgtagtaatatattattcgga
agccttgctggtgtggcaggtgttgtcatgttaatcttagtggtggtgtttattcgacat
cgcatccagagagaaactaagagtgggtatcaggctggcaagaaggaaacaaaggactta
tatgctcctaaacaggcaccgaagaatgccaaaggcaaacgaggacggaaaggaaaaccc
cagaagtccccaaaaccactcggggaagaggaggaggtcagtcttcaaaagagtctcaag
ttcaaccttgatggagtcaatgatagccccaggatacacctgcccttaacatattcacca
ggaagccctgatatcggcaggcactaccgctccaactcccccttaccctccatccagcta
caggcccaatccccctcagcctcacagaagcatcaggtcgtccaggaccttcctgctgcc
aacacctttgtgggaacaggaggagatgacaactctaccggctcagaccagtactcagat
tacagctacaagaccagccaaccgaagtacaacaacaaacagcatcctcatcggcgagtg
accttctccaccgccaaccctgtgcaggacctgcaggacgcctctcagcacagctactat
gacagcggcttggaagaatcagagactcccagcagcaagtcatcgtctggtccacgcatc
ggacccctgaccctgcccgaggaccactatgagagaaccactccagatggcagcattgga
gagaccgagcaccctgaaaatgatatccgctccctccctgatgtggcaatgaccggaaac
tgtacaacggagtgcagcgaattgggccactcagacgcctgctggatgcccgggcatccc
tcccccgtacgcaagaccaggaacctcccgaagctctccaccttcgtgccttaccaggag
agagggagccttggacgtctggcaaacgggagcgccaggctgggtggagaggagcaccgg
tcgcgccttccaccctctcgcagtgcctattccagcagcggtcatgacgccagtcaggac
tgccccttagaggagatgcccctgagtgtagcctctgagtttccacccacctcccctgct
gcccacactccgaaaagagaaatttacctgtga
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