Larimichthys crocea (large yellow croaker): 104920189
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Entry
104920189 CDS
T04659
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lco03016
]
104920189 (cdkal1)
Enzymes [BR:
lco01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
104920189 (cdkal1)
Transfer RNA biogenesis [BR:
lco03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
104920189 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
104920189
NCBI-ProteinID:
XP_010730667
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Position
XIII:20732309..20944035
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AA seq
563 aa
AA seq
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MPSSCDSLIEDIEDMVSSNDPTPHERQSARKSIIPRSRKKKELSNEELQADSLIPGTQKI
WMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADLWLLNSCTVKNPAEDHFRNSIKKA
QDQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDGG
RRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELAERARQSF
QEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEMA
KILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDIICGF
PGETEEDFQETIDLVKLYQFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSQLFHS
YNPYDHKVGERQHVLVTEESFDAQYYVAHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKHF
MKGRAVEDSKPFTPSIAAPLQKGEVSGLIQEQMANGVKDPASMPSSSVLLIGSYSLDREG
LKKLGIGLALAAVILAFIVEKLY
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcttcctgtgactctctgattgaagacattgaggacatggtgtcttctaatgac
cccactcctcatgagagacagtctgctagaaagagtatcataccgaggtctaggaagaaa
aaagagctgagcaacgaggagctccaagctgacagtttgatccctggcacccaaaaaatc
tggatgaaaacgtggggttgcagtcataacaactcagatggagagtacatggctggtcag
ctagctgccagcggatacaagatgactgatgacccaacagaagcagacctgtggttgctt
aacagctgcactgtgaaaaaccctgcagaggaccacttcagaaactcaatcaaaaaagcc
caggatcagcagaaaaaggtggtgctagcaggttgtgttccccaggcccagccacggatg
gactacctgaaaggactcagcattattggggtccaacagattgatcgagtggtggaagta
gtggacgaggctgtaaaaggtcactcagttcgcctgttgggtcagaagaaagatggaggc
cggaggctcggaggagctagactggacctgcccaagatcaggaagaaccctctcatagaa
atcatctccattaacactgggtgtttaaatgcgtgtacctactgtaagactaagcatgcc
agaggagacttggctagttatcccatcgaagagctagcagagagagctaggcagtctttc
caggagggagtatgtgagatctggttgaccagtgaggacacaggggcctatggtagagac
atagggacagacctgcccacattgctgtggagactggtggaggagattcctgaaggggcc
atgctgaggctggggatgaccaacccaccatatatcctggaacacttggaggaaatggct
aagatattaaatcatccacgtgtctatgccttccttcatgttcctgtgcagtctgcctca
gacagcgtcctgatggacatgaagagagagtactgcatcgacgactttaaaagagtggtg
gactttctcaaagagagggttccaggtgtaaccattgccacagacataatctgcggtttt
cctggtgagacagaagaagacttccaagagacaatagacttggtaaaactctatcaattc
ccaagtctcttcatcaaccagttctaccccagacccggtacacctgctgccaagatggaa
caagtaccagcgcatgtgaagaagcagaggactaaagagctctcacaactcttccactct
tacaacccatacgaccataaggttggtgagaggcagcatgtgttggtgacagaggagtca
tttgatgctcagtactatgtggctcacaacaagttctatgaacaggtgctggtacctaag
agggctgagttcaaagggaagatgattgaagtggacatctatgaagcaggaaaacacttc
atgaaaggccgagcagtagaagacagtaagccgttcactccctccattgctgcaccactt
cagaaaggagaggtgtctggcctgatacaggaacagatggccaatggtgtcaaagatcct
gcttctatgccttcttcatctgttttgttgatcggctcttacagtcttgacagggaagga
ctgaagaagctgggaatcgggctcgctctggcagcagtcatcttggcctttattgtagag
aaactgtactga
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