Larimichthys crocea (large yellow croaker): 104920344
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Entry
104920344 CDS
T04659
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104920344 (vps13a)
Membrane trafficking [BR:
lco04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104920344 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Rad26-like_C
Motif
Other DBs
NCBI-GeneID:
104920344
NCBI-ProteinID:
XP_019131563
LinkDB
All DBs
Position
III:29641229..29684043
Genome browser
AA seq
3254 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILTNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVFLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPSLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPKCPLSFGVSLK
NLSLQTADKNWNPSLLDENSRLFFKLVQLDNLFAYWNVNSVLFSNHNADEALRCLQSSME
VNTSLSVSHDFIFRPISADAKLKMNPRSDVDFSSPKLDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKFRPRVHVHRNARIWWKYVITGILEIDVKPRLHMWSWQHIRHHRQ
MVKRYRELYKTKLTSKKPSEELLKALEEPEKTLDIFNITLARQQAEVEASKAGMIIYRPG
IKMEEEESQGWLSWMWNWGGEPETQTKEVKTGGFDELLTPAEKSKLYTAIGYSETAANPN
LPKNFEDMKVNFHMERLIVSIKDDKDKNEIIRLTVGELMSTLTQRPGAQAIKITARLSLF
EVTGLASNRPAPTLLSSRKAATGAGTPLLCILFETNPLDESANQRLHVESQPLEIIYDAI
TVNRMSMFFMPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSQSKKDLPQLSAYSSNIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKMARKQKQSPLHILEPVDLKVVFSRAMVVKDSRMARYKMSGELPLLSLR
ISDDKLRSVLELVESIPLPESRPAAHGTAPSSSKPKQFTPQLTPRRPLNLADQRSSVMFE
SCETISITSLGSEEDLFYDAPSSPVGDKPFFSDNPMPLRYGDLHKRASLVKEDSQKNMTD
LILTFEISEFSVQLCRLCGGQEVTVLHLDVEGLGTELKIRTFDMASNTYLREICLKCPEY
MDSEDQQVQLITTLDNTEVDLLTLEYFRADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHT
EALLNAMNFLNNLLPPSTKKEGGQEELPTIPEEDEAEPEKEEGGRKEEAVVTKKKSSKSS
KFADIVNLHIRADLRCLKVFIRGQKARISEISIEGLVSEVLMRKKEMEVLANLKSIVILD
CDKDAVYKKAVSIADKEVFAFRMINYTDATEGDAYLDMSKVDTSISLTVGCIQVIFLNKL
VSSILAFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPVIFLPQSS
SSHNVIVADLGLLSVKNRFAKQPFKSDAKIPPVVDIMTVRLTDLKMYRTTYINEGFQGET
QLLKPVSLDLEVQRNLSSNWYHSIPDIEITAHLKPISLILSQDDMIVVLRTLSENFSEKS
DAVPPPARPPAIDHSSDCVSNKESQGSGTTGPPSSNTVVIAAVVETHKNCKMKNTLKLDF
MFDSMTLVLYSPNENVIQLMDAHDEQLMLAEFTLGAISTSVHMYSDSSMKASVRMAACLL
DDKRPRIKVVNPRMMAMRPGAEQNMMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLLTVA
DIFLKATQQGFAQAPQPKSSSGAGKEKNINSSVTSKESATSQAVVSKTEMNVLVRNPEIV
FVADLTRADAPALVMTTQCELVMKSGVEGSQMTAVIKDLKVVACPFMTEKRKNNVTTVLQ
PCQVFYQSTQTPTSPQAMEVSINALTLKVSPIIINTVITIQSALTPTAETPEELESPVPV
DLWKRQGWKELKLWFLEEDGDEDTASLAPLIPQGESLQVTIKSICLTLEAGVGHRTIPML
LAKSSFQGHVTNWSTLINLHSELNLEVHYYNEEMGVWEPLLEPLEDETRDGFRSWTLELK
MKKKPQKYSGLSDEVDYNVPDYKTVIVISSKDQLNITLSKCGLAMLSNLGTAFAEAAKQT
AESFQDEAPFVVKNRLGLPVSVRHSEMFSPIGQQSIDRTVKLQDGETLGMDYSTTTDSDQ
FSAMISLSGKDYYIQPTPMGHTSASVIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGS
KYIKIRSPFQIINHFSIPFKVFEGSTCLGTALPTEEFCVPLDSYRSELSLQPVTEDDGDN
QGEQFECSEGFSYEDVSNQQPETQLQQTCRRRGEEGGVLMVNIVPVKDAVTFKDTGGVGE
NFDVPFVLHLWPSILLRNLLPYPISYELKDSGVSAPEATLNPGHSAQLHTAVINQSKLNL
CLLNYLSQDWSSEYSLQSDQEEITFIVFQSLREDDENDGEGTERERAELDIAVHVKYDLG
QTVVAIHCPYWMLNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRHFLRNNKVRLMISD
SELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVSFVPFYMLVNRTKHSV
FICEEEQDYWTEAQPEQTAIPFWPENDTKRLKIKVEGCLLPPRTIDFTRPENCLLLHLDD
SVGGIIVDVNLSEHSATIRFSEYHDGAAPFLIINHTKDQTLLFHQSSQKEAEQEELEAGK
AVHYTWTEPTGSRQLCWKCGAYSGKLKSEEDRRDDMNNEGKLFVISFYEGLQRVVLFTEE
QSIYKLLCESEKAQLAEQEIILSLKNVGVSLVNNSSSQEVSFIGITSSDVVWELKPKKKS
RWKTMSTKEAEMLESSFKRYTESGPIDNAIVDLENNYQVSFTPNGADMRMLQPCDAPLRR
HFLPGVKVEYSVSQRQRAYRVQIHRIQIQNQLPGAIFPYVFYPVKLPKSITMDSEPKPLT
DISIVTRTAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASIMTSEQEVELF
EKDLEYMTTELNDVSAADTTPISLYEYFHISPIKLHLSFSLSTGGEDGLKQKRETELIPV
QSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWEVIRHYSKQAIKQMYVLVL
GLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGLAGAA
SRITGAMAKGVAAITMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTK
PIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDIESLRPPR
FIHEDGVIRPYKEREGLGSQMLQKIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKG
TFGQLTCEWQYLFEEFTKDPMIVENRRLRIEAKERVKSVFHAKEFGKIINFRTPEIAKWV
LAKLEDARDSLPKY
NT seq
9765 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtcgacgtcctcaaccggtttttaggggactacgttgtc
aacctcgacagctcgcagctgaagctcggcatatggggaggtgacgctatactaacaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccctttaaagtgagagctggc
catataggacggttggagctaaagatcccatggaagaacctctacacccagtcagtggag
gcgacactggatggtgtctttctgctcatagtccccacagcaagtataaagtatgatgcg
gaaaaagaggagaagcagctacaggaggctcgtcagagggagctacagaggatagaggaa
acaaagctgaaggctgccgagcaagagaatcctagtctggaaaagcaggacacctttgtg
gagaagcttgtcactcaggtcatcaaaaacctgcaggtcaagatttcaaatatccacgta
cgctatgaagatgatgtcactaatccaaaatgccctttgtcatttggagtgtcacttaaa
aacctcagcctccagacagctgataagaactggaatcccagcctgttggatgagaattca
aggcttttcttcaagttggttcaactagacaacttgtttgcctactggaatgtcaactca
gtactcttctccaatcacaatgcagacgaggccttgcgatgtctccagagcagcatggaa
gtcaacacttctctttctgtcagccacgacttcattttccgtcctatctcagcggatgca
aaactgaaaatgaatcccaggtcagatgtcgacttctcctctcccaaactggacctaatg
gtcaatcttagtgaggtggccattgaactcaacagaccccagtacattagcatcttggag
ctgctgggctcagtggatatgatgtcacgaaacctgccatacaggaagttcagacccagg
gtccacgttcacaggaatgcccgtatatggtggaagtacgtcatcacaggcatactggag
atagatgtaaagcctcgtctccacatgtggtcatggcagcacattcgccaccaccggcag
atggtaaaacgctatcgagagctctacaagaccaaactcaccagcaagaaacccagcgaa
gagcttctcaaagcactagaggagcctgagaagaccttggatatttttaacatcacgttg
gccagacagcaggctgaggtggaggcgagcaaggcaggcatgattatttaccgtccgggt
attaagatggaagaagaggagtcccagggttggctcagctggatgtggaattggggagga
gagcctgaaactcaaacaaaagaagtcaagactgggggttttgatgagctgttaacccct
gctgagaaatctaaactctacactgccattggatacagtgagaccgctgctaatcccaac
ctgccaaagaattttgaagacatgaaggtcaatttccacatggagaggctgattgtgtcc
atcaaagatgacaaggacaaaaatgagatcatcaggctgactgtgggagagctcatgtcc
acactcacacagagacctggagcacaagccatcaaaatcactgcccggcttagtttgttt
gaagtcacaggcctggccagtaaccggcctgcaccaaccctcctgtcatcgaggaaggca
gccacaggagcagggaccccactgctttgcatcctgttcgagaccaacccactggatgaa
agtgctaaccagcggcttcatgtggaatcacaacctctggaaatcatctatgatgctata
acggtgaacagaatgtcaatgttcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcaacactcatgaaactggagcagtttagagaccgcacatccactggtctgatg
tatgtgatcgaaacacagaaagttctcgacctgaaggtgaacctgatggcctcctacgtc
atcattccacaaactggcttttacaatggcactcagaacatcttactgttggatcttgga
catttcaagatgtccagccaaagcaagaaggatcttcctcagctgtcagcgtactccagc
aacattgaagacattatgtccagagcatacgacagctttgatgtacaacttagcagtctg
cagttcctttatagcaaaccagatggtgactggaaaatggcccgtaagcagaaacagtca
ccgctccacatccttgagccagtggatctaaaagtggttttcagcagggcgatggtcgtc
aaagactcccgcatggcaagatataagatgtctggagagcttcctctgctgtctcttcgt
atttccgatgataaacttcgaagcgttctggagctggtagaaagtatcccactacctgag
agcagacctgctgcacatggcactgctccatcctcgtcaaagccaaagcagttcacccca
cagctcactcccagaagacctctgaacttagcagaccagcgctcctctgtcatgttcgaa
tcatgtgagaccatcagcatcacctcactggggtcagaggaagatttgttctacgatgct
cccagctctcctgtcggtgataaacccttcttctcagataatcctatgccactgcgctac
ggggacttacacaaaagagcaagtcttgtcaaggaggactctcagaagaacatgactgac
ttgatcctgacatttgaaatcagcgagttttctgttcagttgtgtcgtctctgtgggggt
caggaggtcacagtgctccacttggacgtagagggtttgggcactgagctgaaaatacgc
acctttgacatggcatctaacacctacctacgagagatctgcctcaagtgccctgaatac
atggattctgaagaccagcaggttcagctgatcaccactctagacaacacagaggtcgac
ctgctcaccctggagtatttcagagctgacaagaatggccccgagttcaagtctcaacac
aacaatacagaacagctcatcaaggtgaccttctcatccctggatgtccatctccataca
gaggctctactcaatgccatgaacttcctcaacaacctgcttcctccatccactaagaag
gagggcggacaggaggaactccccaccatccctgaggaggatgaggcagagccagagaag
gaggaaggaggaaggaaagaggaagctgttgtaaccaagaaaaaaagttcaaagagttca
aaatttgctgatatcgtcaatctgcatatcagagctgatctccgctgtctcaaggttttc
attcgaggacagaaagcccggatctctgagatcagtattgaaggtctggtttctgaggtt
ctgatgaggaaaaaggagatggaggttttggccaatctgaagagcatcgtgatcctagac
tgcgacaaagatgcagtttataagaaggctgtgtctatagcggataaggaagtgtttgcc
ttccgcatgataaattacacagatgcgacagaaggagatgcctatctggacatgtctaaa
gtggacacctctatctcactgaccgtgggatgcattcaggtcatcttcctcaacaagctc
gtctcctccatactggcattcatcaataacttccaggaggctaaagaggccctggccgag
gtgacagtccaggctgcagaaaaggcagcgtcaggtgtgaaggagctcgcagagcggagc
actcggattgctctgaatgttcacttcaatgcacccgtcatcttcctgccccagtcctcc
tcttcccacaatgtcattgttgctgaccttggcctgctgtctgtcaagaaccgttttgca
aagcagccctttaaaagtgatgcgaagatcccacctgttgtggatataatgaccgtgaga
ctaaccgacctcaagatgtacaggaccacatacataaatgaaggttttcagggagaaacc
cagctgctgaagccagtcagcctggacttggaagtccagagaaatctttcatccaactgg
taccacagcatacctgacatagagatcactgctcatcttaagcctataagtctgatcctc
agtcaggatgacatgatagttgtcctgaggactctgagtgagaacttctctgagaagtct
gatgctgttccacctccagctcgcccgccagccatcgaccactcctctgattgtgtatct
aacaaagaatcgcagggctctggaaccactggaccacccagcagtaatacagtagtgata
gctgctgttgtggagacccataaaaactgcaagatgaagaacacgctcaaattagacttc
atgttcgactcaatgacgctcgtcttgtacagcccgaatgagaacgtgatacaactaatg
gatgcacacgatgagcagctcatgctggcagagtttactctgggcgccatctctacctcc
gtccacatgtactccgacagctccatgaaggcctcggtccgtatggctgcatgcctcctg
gatgataagagacccagaatcaaggtggtcaacccgagaatgatggcaatgcgtcccggt
gcagaacaaaacatgatggtagaggtgaactatcgtcagggccgtgacggcaccactttg
gacacagtggtgcaggatgtgtacctgtgtgccagcatggagttcttgctcacagtggca
gatatctttcttaaggccacccagcagggttttgctcaagcgccgcaaccaaagagcagt
tctggagcaggaaaagaaaagaacataaactcctctgtcacatctaaagagtctgctaca
tctcaagctgtggtgtcaaagacagagatgaatgttctggtgcgtaacccggagattgtg
tttgtggctgacctgacgcgtgctgacgctccggccctggtgatgaccacacagtgtgaa
ctagtgatgaaaagtggtgtagagggatcacagatgactgctgttatcaaggaccttaag
gtggtggcgtgtcccttcatgacagagaaaagaaaaaacaacgtgaccacggtgctgcag
ccttgtcaggtgttttaccagagtactcagactccaacatctcctcaggctatggaggtt
tccatcaatgctctcacactgaaggtatctccaatcatcatcaacacagtgatcaccatc
cagtcagcactgactccgactgcggagacccctgaggagctggaaagtcctgttcctgtg
gacctgtggaaaagacaagggtggaaggagctcaaactctggttcctagaagaggatggg
gatgaagacacagcatcactggccccactgataccacagggagagtcattacaggtgacc
atcaaatcgatctgtctgactctggaggctggagtgggacaccgcactatccccatgctt
ttggccaagtcctccttccaaggacatgtcacaaactggtccacgctcattaacttacac
agtgagctcaacctggaggttcactattacaatgaggagatgggagtgtgggaaccgctg
ctggagcctttagaagatgagacaagagacggttttagatcgtggacactagaactgaag
atgaagaagaagccacagaagtactcaggcttatcagatgaagtggattacaatgtcccg
gactataagacagtgatcgtcataagcagcaaagaccagctcaacatcaccctgtccaaa
tgtggcctggccatgctgagtaacctgggcacggcatttgcagaagctgccaaacagaca
gctgagtcgttccaggatgaggctccatttgtggtgaaaaaccgcctgggcctaccagtg
tctgtccgccacagcgagatgttctcgcccatcggccaacagagcatcgaccgcactgtg
aagctgcaggatggggaaaccctcgggatggactattcaaccacaacggactccgaccag
ttctcagccatgatctccttgagtggaaaggactactacatacagcccactccgatgggc
cacacctcagccagtgttatccctctgattaaggtcggcaggggaatgtacagtgtaatg
cacaaagactctggagtcactcgtttcctggtctgtcagatttattctgtggaaggcagc
aagtacatcaagatccgctcccctttccagatcatcaatcatttctcaatccctttcaaa
gtttttgaaggatcaacatgtctgggtacagctctccctactgaggagttctgtgtgcct
ctagactcatataggtctgagctgagccttcagccggtaacagaggacgacggtgacaac
cagggcgagcagtttgagtgctcagagggcttcagttacgaagacgtcagcaaccagcag
cccgagacacagctccagcagacctgccgtcgccgtggggaggagggtggtgtgctgatg
gtcaacattgtgccagtaaaagatgctgtgacattcaaagacactggaggtgttggggag
aactttgatgtgccgtttgtgcttcacttgtggccttccatcctgctacgcaacctgctg
ccttaccctatctcctacgaactgaaggacagtggagtctctgcccccgaggccactctg
aacccaggtcactctgcccaacttcacactgcggtcatcaaccaatcaaagctcaatctc
tgcctgctgaactacttgtctcaggactggtcctctgagtacagtctccagagtgaccag
gaagagatcaccttcatagtgttccagtctctacgagaggatgatgaaaacgatggtgaa
gggacggagagggaaagggctgagttggacatagcagtgcatgtcaaatatgacctggga
cagacggtggttgctattcactgtccatattggatgctgaacaagacaggcaggttgctg
cagtacaaggccgatgatatccaccgtaaacaccccctggactacgacatgccactgctc
ttctccttcaagccccggcacttcctgagaaacaataaggtccgtctcatgatctcagac
agtgaactctccgatgatttctccctggatacagttggtagccatggagatgtcaaatgt
aaaggccgatacaaagattacctggttggtgtgaagattgacgcaagtagtttcagtctg
acccggatcgtgagcttcgtgccgttttacatgctggttaacaggaccaagcacagtgtc
ttcatatgtgaagaggagcaggactactggaccgaggctcaaccagaacagacagccatt
cctttctggcctgagaacgacaccaagcgcctaaagattaaagtagaaggttgtttattg
cctcctcggactattgactttacacggccagaaaactgcctattgcttcatctggatgac
tctgtgggcgggatcattgtggatgtgaatctgtcagagcactctgccacaatccgattc
tctgagtaccacgacggcgctgccccttttctcatcatcaaccacacgaaagaccagact
cttctcttccatcagagctctcagaaggaggcagagcaggaggagcttgaagctggaaaa
gctgtgcactacacatggactgaacccaccgggtcccgacagctttgctggaagtgtggt
gcttacagtgggaagctgaagtctgaagaggaccggcgtgatgacatgaacaatgagggg
aaactgtttgtgatctccttttatgaaggtctccagcgagtcgtgctgttcactgaggaa
caaagcatctacaagctgctctgtgagagcgagaaggctcagctggccgaacaggaaatc
atcttgtcgctaaagaacgtgggcgtgtctctcgtcaacaacagcagcagtcaggaggtc
tcctttattgggatcacaagctctgatgtggtgtgggaattaaagcctaagaagaagagt
cggtggaagacaatgagcactaaagaagctgagatgctggagagcagtttcaaaagatac
actgaatctggacccatagacaacgccatcgtggacctggaaaacaattaccaggtgtcc
ttcactcccaatggtgctgatatgcggatgctgcagccgtgtgacgctcctctcaggagg
cacttcctgcctggggtgaaggtggagtacagcgtctcacaacgacagcgagcataccgc
gtccaaatccaccgcattcagatccagaatcagctaccaggagccatcttcccttatgtt
ttttaccctgtaaaactgccaaaatctatcaccatggactcagaacctaaacctctaact
gatatcagcatcgtcaccagaacagcagggcactctgatatctctcgcatcaagtacttc
aaggttttgattcaagagatggatctgaagctcgatctgggctttctgtacgccatcctg
gacctgttcacacctgagaatgccagcatcatgacctcagaacaggaggtggaactgttt
gagaaggacctggagtatatgacgacagaactgaacgacgtttctgctgctgacactact
ccgatcagcctctatgagtacttccacatttcccccatcaagctgcacctgagtttctct
ctgagtaccggaggagaagatggcctgaaacaaaagagagaaacagaactcattcccgtc
cagtcactcaacctgctgctgaagagtatcggagccacactcactgatgtgcaggacgtt
gtcttcaagctggccttctttgagttgaccttccagttttgtaccacccagcagctacag
tgggaagtcatcagacattattccaagcaggctattaaacaaatgtatgtactggtgctc
ggcctggatgtacttggaaatccttttggactgatcagaggtctgtcggagggggttgaa
gcctttttctatgagccctaccagggagctatccagggacccgaggaatttgttgaagga
atggctcttggggtgaaggccctggttggaggagctgtagggggtttagcaggcgcggcc
tccagaatcacaggcgccatggcaaagggcgttgctgccatcacgatggacgaggaatac
cagcagaagagacgagaggctatgaacaaacaacctagtggcctgagagaaggactgacc
aggggcggcaaaggattagtgtctggatttgtcagtgggatcacagggatcgttacaaaa
cctattaaaggagcccagaaggagggtgcagcaggcttctttaaaggtgttgggaagggt
ctggttggtgcagtagccagacctacaggaggcattatcgacatggccagtagtactttc
caagggatcaagagggcagcagagacttcacaagatatcgaatctctgcgtcctcctcgc
ttcatccacgaggatggtgtcatacgaccatataaggagagggaggggctcggcagtcag
atgctccagaaaattgagaatggacgctttgccaagtacagatactttgctcatgccaag
gtcaacgaatccgacttcctcatgatcaccaagaggggaatattttttgtgacgaaaggc
acattcggtcagctgacctgtgagtggcaatatctgtttgaagagtttacaaaggatcca
atgattgtagagaaccgccgacttcgcattgaggccaaggagagagtaaagtctgtcttc
catgccaaggagtttggaaagatcataaacttcagaactcccgagatagccaagtgggtt
cttgccaaattggaggatgcaagagacagtttaccgaaatactaa
DBGET
integrated database retrieval system
