Larimichthys crocea (large yellow croaker): 104920416
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Entry
104920416 CDS
T04659
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104920416 (col9a2)
04518 Integrin signaling
104920416 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104920416 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104920416 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lco00535
]
104920416 (col9a2)
Proteoglycans [BR:
lco00535
]
Extracellular matrix (ECM) proteoglycans
Others
104920416 (col9a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104920416
NCBI-ProteinID:
XP_010730980
UniProt:
A0ACD3RG34
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Position
XIII:45959417..45978662
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGTPGSDGIDGDKGPPGPPGP
PGQKGEPGEPGPDGVPGENGIDGLIGAKGDRGPVGSPGPKGQPGPTGEPGAPGPGLPGLS
GIPGPIGLPGEIGETGPKGVMGSPGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGILGDPGSIGKTGTKGEVGISGEQGIPGPSGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGLPGPPGEEGPQGPPGEAGDKGDKGSRGIPGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGQAGMPGPPGPQGAAGLPGSPGAKGGPGVKGEPGPRGHV
GMQGASGPLGEPGLPGEAGMEGVPGPKGDRGQRGEAGPQGIVGKPGNKGVRGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDQGYNGPT
GDPGKPGDQGPPGLPGPRGLNGERGVPGMPGIQGSSGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGPQGPHGLPGARGIPGIIGGPGQIGNTGLKGKR
GPKGERGDPGKPHPGQPGPPGIPGPPGIDGVARDGRPGERGPQGSAGEAGYPGKAGPAGL
PGFCETAMCLAASAYTSPRLQEAGRIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggacagcccggcccaccaggcccctct
ggcacccctggatcagacggcattgatggagataaaggacctcctgggccccctggtcca
ccaggacaaaagggagagccgggagagccaggtcctgatggagtgccaggagagaatggg
attgatggtttgattggagcaaagggtgatcgaggtcctgttgggagccctggccctaag
ggtcaacctggaccaactggtgaacctggagcgcctggacccggccttccaggactgtct
ggaattccagggccgattgggcttccaggtgaaattggagaaactggaccaaagggtgtc
atgggatcacctggacctccaggacttcctggacctcctggcaagccaggtcctccaggg
aagtttattggcggagaggaaggcagtgcagacttccagtgtcctcttaactgtccagca
ggacctaaaggcccacagggactgcaaggagtcaagggacacaaaggacgtgctggtatt
ctcggtgaccccggcagcattggaaagacgggtaccaagggagaagtgggcatctctggg
gaacagggtatcccaggaccttcgggtccaatgggtctgaggggttacccaggaatgatg
ggtcctaaaggggaagcagggcctcgtggttacaagggcatcaacggacctgtaggactt
cctgggccccctggtgaggaaggacctcagggaccacctggagaggcaggagacaaggga
gacaaaggcagccgaggtatccctggcccacagggtgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggtattcctggaatcaagggcggc
cctggccaggctgggatgcctggtcctcctggtcctcagggagcagcgggattgcctgga
agtcctggggcaaagggaggacctggagttaagggcgagcctggacctaggggccatgtt
ggtatgcaaggtgcctccggaccactgggtgagcctggtcttcctggcgaggctggtatg
gaaggtgttcctggacccaagggtgacagaggccagcgtggagaagctgggccacaggga
atagtcggcaagcctggaaacaaaggagtgagaggaccaataggtgttccaggtgcacag
ggtcttagtggaaccaagggagacaagggcttccaaggaaaagttgggtcaaagggagac
gttggtgaccccggtgttgaaggattggctggggagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggaatcaggggtgaccaaggatacaatggacccaca
ggagaccctggtaaacccggagaccagggaccaccaggattgcccggtcctaggggactc
aatggagagcgaggagttcctggcatgccaggcattcagggatcatcaggacgtgatgca
tccgaccagcatattattgaagtggttttgaagatgttgcaggagaggcttgcagcagta
gcggtgagcgccaagagggctgtgcttggtggagcaggtgtaatgggtcctcctgggcct
cctggacctccgggttctcctggtcctcaagggccacatggcttacctggtgcccgtggc
attcctggcataattggaggacctggacagattggaaacacaggacttaaaggaaagaga
gggccaaagggagaaagaggagatcccggtaaaccccatccaggacaaccaggaccccca
ggaataccaggtcctcctggtattgatggcgtggctcgggacggtaggcctggcgagaga
ggacctcagggatcagccggagaggccggttaccccggtaaggcaggtccggcaggtctc
ccaggcttctgcgagacggcaatgtgtctggctgcatcagcgtacacctccccgagacta
caggaggcgggaagaatcaaaggaccaaatgtttag
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