Larimichthys crocea (large yellow croaker): 104921032
Help
Entry
104921032 CDS
T04659
Name
(RefSeq) transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lco01001
]
104921032
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104921032
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104921032
Protein kinases [BR:
lco01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
104921032
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104921032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
Bromodomain
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
PHD-1st_NSD
zf-C3HC4
zf-C3HC4_2
CEBP_ZZ
DUF4795
Motif
Other DBs
NCBI-GeneID:
104921032
NCBI-ProteinID:
XP_027129002
LinkDB
All DBs
Position
XXI:11239034..11248814
Genome browser
AA seq
980 aa
AA seq
DB search
MQVTRMDGRTEMQETVDAAAAAAAAAAAAVIIVENEAESMPVLEQKSPVTGQNHMDTCPV
CHLNFHSREPKLLPCLHSFCKKCLPPPSRNLAVTELPNSQDDRATKPLNVIRCPVCRQEC
MEVDVMENVFVKDTVEAPSSTMERTVQLCMTCDDNTEAAGFCVNCVEYLCSTCVEAHQRV
KFTRDHNIRPMTELSQKVHGVSTQRPMFCDIHKQEPLKLFCETCDLLTCRDCQLVKHKDH
NYQFLEDAYKNHKQHMENVTHQLEEKKKVIEEVSNSINNGLLQVDQNRSSVRSEIKKSIC
SLILEINKKGKMLINQLEAVTKDHESVLRKQQEDIGYLSRHLDHVINFTKWATARNGGTA
LLYCKRLILFQIGNLLQAKCSTSFVPQSTVRFQCRSSYWASNVDLGSLVVESVPGQQLGG
VQGIPHQLPHHGQAPSGSPHSFALGAPHNTLAQLQMQVDKLNPQAHWQPQPPPPPWTWYQ
SVRLQRNLPGPLQGGSPSHTMPPQPGRRFMVLPPNNASPTSSLPSPGFTPQPLRAMGNSS
SYQPKPMDVFSPPPLYPHITPLPVNAGTTLPQSRHTIEPTYLNRRSDSGGPIYMLKPNYS
HILPSSLPHSNVQGQENSAEYAAVSQEEKPGTVSWKAPETHQTSGAVGSAVKKRRRSSPG
PVIVIKDEPDDDGGYVQANQRASLPDSTGDQPQITAQDEVPTRLQSTDDKLHGPSRPPSN
PQDQSSANHVRSLEEQQHQALLEDSNEALCAVCQTGGELLCCDKCLKVFHLSCHVPSLLK
SPSGEWFCSFCRDLLTPEMRYESKPDAKTVKKEPDTEGGFLPEDKQKCERLLLHLFCSDL
SSDFQEPLSASVCANNRLTVKGPMKLSTVKKRLEAKQSPCYQSAAEFVSDIRLVFENYNS
LSEVDTKVTVAGKKLKELFEDHLRVIFPDQTFPEIKLETAPPDSQLSSLDNISQIAKRRR
TCAALDQDTAGCPGREEAAL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgacgaggatggatggacgcacggagatgcaggagacggtggatgctgctgct
gctgctgctgctgctgctgctgctgctgtcatcatcgtggagaacgaagctgagagcatg
ccagtgctggagcaaaagtctcctgtaaccggacaaaatcacatggacacttgccccgtt
tgccatctaaactttcacagccgggagcccaaacttctgccgtgtttgcactctttttgc
aagaaatgtttgcccccgccgtcgaggaatttggccgtgacagagctgccaaactctcag
gatgacagggcgaccaaaccactcaatgtgatccgctgtccggtgtgcaggcaggagtgc
atggaggtggacgtgatggagaacgtctttgtgaaggacacagttgaggctcccagcagc
acaatggagaggacagtccagctctgtatgacctgcgatgacaacacggaagctgccggg
ttttgtgtgaactgtgttgagtacctgtgcagcacctgcgtggaggcccaccaaagagtc
aaattcaccagagaccacaacatcagaccgatgacagagctatcacaaaaggtccacggt
gtgtcgactcagaggccgatgttctgtgacatccacaaacaagagccactaaagctgttc
tgtgagacctgtgacctgctgacctgtcgtgactgccagctagtgaagcacaaggaccat
aattaccagttccttgaagatgcttataaaaaccacaaacagcacatggagaacgtgacc
catcagctagaggagaagaagaaagtcattgaagaggtatcaaactccataaacaatggg
cttcttcaggtcgaccagaaccgttcgtctgttcgtagtgaaataaagaaatccatctgc
agtttgattctcgagataaacaagaagggcaagatgctaattaatcaacttgaggctgta
acaaaggatcatgagagtgtcttgcgaaaacaacaggaggatattggctatctatccaga
cacctggatcatgtcatcaacttcaccaaatgggccacagccaggaatgggggtacagcc
ctcttgtattgtaaacgtttgatcttgtttcagattggaaacctccttcaggcaaaatgc
agtacctcatttgtaccacagagcactgtgcgcttccagtgtcgatcctcttactgggcc
tcaaatgttgatctcggttctttagtggtggagagtgtaccaggccaacagctgggtggt
gttcagggaatccctcatcagctcccccaccatgggcaggccccctcaggctcaccccac
agctttgccctgggagcaccccataatactctggctcagctccagatgcaggtggacaag
ctaaacccgcaggcccattggcagcctcaaccacctcctccaccctggacatggtaccag
agtgtcagactacagcgaaacctcccagggcccctgcaaggaggctctccctcccacact
atgcctccccaaccgggccgcaggtttatggtgctacctcccaacaacgccagtccaact
agcagcttaccaagccctgggttcacgccccagcctctgagggcgatgggaaacagctcc
agctaccaacccaaacctatggatgtgttttcccctccacctctgtacccccatataaca
ccactgcccgtcaatgctggcaccactttaccccaatcacgacacacgattgagcccaca
tatctgaatagaaggagtgattcaggtggtccaatatatatgctgaaaccaaactattcc
cacatcctgccatcttctttgccgcacagcaatgtgcaaggacaggagaattcagcagag
tacgctgctgtatcccaggaggagaagccagggaccgtatcctggaaagctccggaaaca
catcagacaagtggagccgtgggctcagctgtcaagaaaagacgaaggtcttcaccaggt
cccgtcatagtcatcaaggatgagccagatgatgacggtggctatgtacaagctaaccaa
agagccagcctccctgacagcacaggtgaccaaccacaaataacagcccaagatgaagtc
ccgactcgtcttcaaagcacagatgacaaactccatggcccttcacggcctccaagcaat
ccacaggaccagagtagcgctaatcatgtccgttcactggaagaacaacagcaccaggct
ctgctggaagactcaaatgaagccctgtgtgccgtgtgtcagaccggtggagagctgctg
tgctgcgataagtgtctaaaggtttttcacctctcgtgccacgttccaagtctcctcaaa
tctcccagtggcgaatggttttgctctttctgccgtgacctgctaacgcctgagatgagg
tacgaaagcaaacctgacgccaagacagtaaagaaggagccagatactgaaggaggattt
ctccctgaagacaaacaaaagtgtgagaggctgttgctgcacttgttttgcagtgacctg
agttcagacttccaagagcccctatccgcctcggtgtgtgctaataacaggctgactgta
aaaggacccatgaagctttccactgtgaaaaagcgactggaggctaagcagagcccgtgt
taccaaagcgctgcagagtttgtatcagacatcaggctcgtctttgagaactataactcc
ctcagtgaggtcgacacaaaagtcaccgtggcaggcaagaagcttaaggagctgtttgaa
gatcacctgagggtcatcttccctgaccagacctttccagaaatcaagctggagactgcc
cctcctgactctcagctctcatctcttgacaacatatcccagattgcaaagcgccggcgc
acatgtgcagccttagaccaggatacagcaggctgtcccggtagagaggaggcagcatta
tga
DBGET
integrated database retrieval system
