Larimichthys crocea (large yellow croaker): 104921223
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Entry
104921223 CDS
T04659
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104921223 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104921223 (thoc5)
03041 Spliceosome [BR:
lco03041
]
104921223 (thoc5)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104921223 (thoc5)
Spliceosome [BR:
lco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104921223 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
104921223
NCBI-ProteinID:
XP_010731990
LinkDB
All DBs
Position
III:complement(27875200..27882602)
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AA seq
684 aa
AA seq
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MSDALKKRKSKVLRNEGGTPEMMKRGRGEGDQQDVRVYSEEVELDGRDPEQDYLQYKESC
ESLATLMSEIQDLKANGAKEGCAEVEQRRMQSCIHFMNLKKLNRLAHMRLKRGRDQTHEA
KQRVDVLHLQLQNLLYEVLHLQKEISKCLEFKSKHEEIDLVSEEEFYQEAPSEISRPHHT
KNDPHQLTLARLDWELEQRKRLAEKYKESQATKEKIQKSIEVKKEHLTSLQPGLNAIMQA
SLPVQQYLSMPFEQAQKQTEIARHLPPPLYVLFVQANAYGQACDKNLCVSISGDVDEAKA
LSKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGS
ILHLFFYYLMNLNIMTVKTKVSTSTDLNTAISAGDLLKADTLLSCLYTNDQGRETPNPAN
RYQFDKVGIVCFADYVEELGHPYTWVQTLGGLHFPRDASEAVRVGSSLSASQMESTMKLL
RGRVQSRLALHKQFASLEHSIIPVSSECQHLFPAKIMSRLARWTTITQEEYMALPYTRHV
SDAGLAKETDLYFMAVVERGTARLQSAVVLSPRYPEISPLFSLSLSWKGERSGRTDDNLR
AMESEVNVFKNELQGPRPGHQLLTNQISRLCVCLDVYLETESQDDGVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgccctgaagaagcggaagtccaaggtcctccgcaatgaaggaggcaccccg
gagatgatgaagcgaggacgcggagagggggaccagcaggatgtacgtgtctatagtgag
gaggtggagctggatggcagggaccctgagcaggactacctgcagtacaaagagtcatgt
gagagtctggccacgctcatgagtgagatccaggatcttaaagccaacggagctaaggag
gggtgcgctgaggtggagcagagacgcatgcagagctgcatccacttcatgaatctgaaa
aaactcaaccgtctggctcatatgcgactaaagagaggccgagaccagacacacgaggca
aagcagcgggtggatgtgctgcacctccagttacaaaacctgttgtatgaagttttgcat
cttcagaaggagatcagcaagtgtctggagttcaagtctaaacatgaggaaatcgacttg
gtgtctgaggaagagttttatcaggaggcaccatcagagatttccaggcctcaccacaca
aaaaatgatccccaccaactcacgctggcacgactagactgggagcttgaacagaggaag
aggttggcagagaaatacaaggagtcacaggctactaaggagaagatccagaagagcatt
gaggtgaagaaggaacatctaaccagcttgcagccaggactcaacgccattatgcaggcc
tctctcccagtgcagcagtacctgtctatgccttttgaacaggcccagaagcagacagag
attgcccgccacctgcctccacctctctatgtcctgtttgttcaagccaatgcctatggc
caagcctgcgacaagaacctgtgtgtctccatcagtggcgacgtggatgaggccaaggcc
ctgtccaagcctccagaagattcccaggatgacgagagtgattcagatgcagaggaggag
caagagaaaacgaagaggagaaggccaactacaggtggccaactggatgacaaaagacgt
gagatgctgaaaaggcaccctctgtccctctgcctagacctcaagtgtaaagatggcagc
atcctccatctcttcttctactacctgatgaatctgaacattatgacagtcaagaccaag
gtctctacctccacagacctcaacacagccatcagcgcaggggatctgctgaaagcagac
actctactcagctgcctctacactaacgaccagggacgagaaacgcctaacccagctaat
cgctaccagtttgacaaagtcgggatcgtttgctttgcagattatgtggaagagcttggc
catccctacacgtgggttcagactttgggaggattacattttccccgagatgcttcagag
gctgtgcgtgtgggcagttctctgagtgccagccaaatggagagcaccatgaagctgctg
aggggacgagtccagtcccgcttggctttgcacaagcagtttgcctctttagagcacagc
atcatcccggtctccagtgagtgtcagcacctgtttcctgccaagatcatgtcccgtttg
gctcgctggaccaccatcacccaagaggagtacatggctctgccttatacacgtcatgtg
tctgatgctgggctggccaaggagactgatctgtactttatggctgtggtggagaggggc
acagctcgtcttcagtccgctgtggtgctgagtccccgttacccagaaatctctcctctt
ttctccctctccctcagctggaagggagagcgcagtggacgcactgatgacaaccttcga
gccatggagagcgaggtcaatgtgttcaaaaatgaactacaaggaccacgtccaggacac
cagctcctgaccaatcagatctcacgcctgtgtgtgtgcttggacgtttatctggagact
gaaagtcaagatgacggcgtggaaggaccccgagagtttcccagagaaaagatgtgcttg
cgcactgtcaggggcccaaatcgcctgaagccattcaagtacaaccatccccagggcttc
ttcagtcaccgttaa
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