Larimichthys crocea (large yellow croaker): 104921249
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Entry
104921249 CDS
T04659
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03030
DNA replication
lco03410
Base excision repair
lco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104921249 (pole)
03410 Base excision repair
104921249 (pole)
03420 Nucleotide excision repair
104921249 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lco03032
]
104921249 (pole)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104921249 (pole)
Enzymes [BR:
lco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104921249 (pole)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
104921249 (pole)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
104921249 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POL2_thumb
DNA_pol_B_exo1
DUF1744
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
104921249
NCBI-ProteinID:
XP_027133976
LinkDB
All DBs
Position
III:complement(28132064..28146429)
Genome browser
AA seq
2293 aa
AA seq
DB search
MVLQNSGRFRADRGQSGDQENQDDGSSMSALKRLERSQFTDEMDARFGFDRMKEPGEKTG
WLINMHPTEILDEDKRMISAVDYYFIQDDGSRFKVALPFKPYFYVATKKNCEREVISYLS
KKFQGKVAKLDIVPKEDLDLPNHLIGLKRNYIKLSFNTVDDLIKVKREISPAVRKNKERE
QSNDAYTSMLSSALSGGNVSSAGEDGTLKSISDQLDNIVDMREYDVPYHVRLSIDLKIHV
AHWYNVRYRGSAYLPEIIRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMI
DGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDNEAALIQRWFDHVQETRPNIFV
TYNGDFFDWPFVETRAALHGLSMYREIGFQKDNQGEYKASQAIHMDSFRWVKRDSYLPVG
SHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVMDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLMQRVERTMRHAIEEEEKIPLEQVTNFNEVC
DEIKNKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPG
ATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHTLNREEQAKHEK
KRLADYCKKAYKKTHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
AAQDSGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNIL
VKEGFTNDQYHELVDPASLTYNIRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSK
AANMPDAELFELISENRSMSRRLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYII
SRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQPL
EPGQAADMEDFGRPPRPLQPAIPISTKRKRASQGEDSQVESQDVELTQSWREILGPPPPS
GKTREERLVWLRYHKKKWELQLKQRKERKKKRRMLDGEAQPVGGGVIRDGPITGLGSFLR
RTARSILDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGAT
YKKVNRMLPRSNMVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVR
LGCMCMVNKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYLYHHSQGHKALF
GLFIPSQRKASIFVLDTVRSNQMPNLSNLYTAERTALLEKTTEELLPPEKHNFEVRAEND
VKAIYRALQRILLNYKEERRGPTLIAMQSNWELRRLAAGMPVLEEFPVVPVHVLDEISYN
VLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAQGCYSTVCVELDLQSLAVNTIL
QSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGATALASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLISEFKRLG
STVVYGNFNRIILCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLMWMDPA
NCGGVKGKLPSSILYGEEGAKQKKNKRGEGDEEGSEDEDEPEAEEDDDGDGETDEVEELI
ESNWNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQ
AVGDLSALPGMISFSQEYVSSELTQNFFTITQKIQKKVTGTRSVTQPSEMFPVLPGSHLP
LHNPALEFIKYVCQVLSLDGNIVNQMNKLKRDLLRLVDVGEFSDDAQFRDPCNSYILPEV
ICHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETESIEMALVEALQKKMMSYTL
QDLMCTKCKGVKEANMPLYCRCAGDFDLTFPTKNFSEQITVFRNIASHYNMSFLEETIDW
LLVMSPHIGQNAH
NT seq
6882 nt
NT seq
+upstream
nt +downstream
nt
atggttctgcagaacagcggcaggttccgagcggaccgaggacaaagtggagatcaggaa
aaccaggacgatggatcctccatgtccgccctcaagcggctggagcgcagccagttcacc
gacgagatggacgctcgcttcggcttcgacaggatgaaggagccgggggagaaaacaggc
tggctgatcaacatgcatcctacagagatcctggacgaagacaagaggatgatcagtgct
gtggactattattttatccaggatgatggaagcaggtttaaggtggcccttccctttaag
ccatatttttacgttgccactaaaaagaactgcgagagagaagtcatctcatacttgtca
aagaagttccaagggaaagtggcaaagctagacattgtgccaaaagaggatttggacctg
ccgaaccatctcatcggactgaagagaaactacatcaagctgtcgttcaacaccgtggac
gacctcatcaaggtcaagcgtgagatctccccggcggtacgcaaaaacaaagagagggag
cagtccaacgacgcctacacctcaatgttatcaagcgccttatcaggcggtaatgtgtcc
tcggcgggtgaagacgggacattgaagagcatttcagaccagttggacaacatcgtggat
atgagagagtacgatgtgccctatcacgttcgactgtccatcgacctcaagatccacgtg
gctcactggtacaatgttcgatacagaggcagcgcctacctaccggagattatacggaga
gatgaccttgtggagcgaccggaccccgttgttttggctttcgacatagagacgaccaaa
ctgccgctgaaattcccagacgcagagaccgatcagattatgatgatctcctacatgatc
gatggacaggggtttctaatcacaaaccgagagatcgtctctgagaacatcgaagatttt
gagttcactcccaaacctgagtatgaagggcctttcactgttttcaatgaggataatgag
gcggctctcattcagaggtggttcgatcacgtccaagaaaccagaccaaacatttttgtg
acctacaacggagacttctttgactggccctttgtcgagactcgtgctgcgctccatgga
ctgagtatgtacagggagattggtttccagaaggataaccaaggagagtacaaggccagt
caagccatccacatggactccttcaggtgggtgaagagagacagctacctgccagttgga
agtcataacctgaaggcagcagcaaaggctaaactgagctacgacccagtggagctggac
ccagaggagatgtgccgcatggcaactgaagagccgcagactttagccacctactctgtg
tcagacgccgtggccacatattacctgtacatgaaatacgttcaccccttcatcttcgct
ctgtgtaccatcatccccatggagcctgatgaggtgctgcgtaaaggttctgggactctg
tgtgaagctttgctcatggtgcaggccttccacgcgaacatcgtcttccccaacaagcag
gagcaggtcttcaacaaactgacagacgacggccacgtcatggactcggagacctacgtg
ggcggtcacgtggaggcgctggagtcgggagtgttccgcagcgacatcccctgccgtttc
aaaatgaatccagctgcgttcgacttcctgatgcaaagagtcgagagaacgatgcggcac
gccatcgaggaagaggagaaaatccctttggagcaagtcaccaactttaatgaggtttgt
gatgagatcaaaaacaagctgacttccctgaaggaggttccaaacaggattgaatgtccc
ctcatctaccatctggatgttggggcgatgtaccccaatatcatcctcaccaaccgcctg
cagccctctgctatggtcgatgaggccacgtgtgccgcctgtgactttaacaagcctggt
gccacctgccagaggaggatggcctggcagtggagaggggaaatcatgcccgccagccgc
agtgagttccaccgcatccagcagcaactcgagtctgagaagttcccgccgtttttcccc
aacggtccacctcgggccttccacactctgaacagggaagagcaggccaaacatgagaag
aaacgtctggcagactactgtaagaaggcctacaagaagactcacgtcaccaggctggag
gagagagtcaccaccatctgtcagagagagaactccttctacgtcgacacagtgagagct
ttcagagatcgccgttacgaattcaaaggactccacaaggtgtggaagaagaagctgtca
gcagctcaggacagcggagacgctgctgaggtgaagcgctgcaaaaacatggagatcctg
tacgagtctcttcagctggctcacaagtgtatcctcaactctttctacggttacgtcatg
aggaaaggggcgcgctggtactccatggagatggccggcattgtgtgctacactggagcc
aacatcattactcaggccagagagctcattgaacaaatagggagacccctcgagttggac
actgatggtatctggtgtgtcctccccaacacctttcccgagaattttgtggtgaaaacc
agtaacgagaagaagcccaaggtgaccatctcttacccaggagctatgctgaacatcttg
gtgaaggaggggttcaccaacgatcagtaccacgagctggtcgaccccgcgtctctcacg
tacaacatcagggctgagaacagcatcttctttgaggtggacgggccgtacctggccatg
atcctgcctgcctcaaaagaggaagggaagaagctgaagaaaaggtacgctgtgtttaat
gaggatggctctctggctgagctgaaaggttttgaagtgaagagaagaggagagctccag
ctcattaagattttccagtcgtctgtgtttgaggcttttctcaaaggtaccactctggag
gaggtgtacgcctccgtggccaaagtggctgactactggctggacgttttgtacagcaag
gctgccaacatgccagatgcagagctgtttgaactgatttccgagaatcgttcaatgtcc
agaaggctggaggactacggagagcagaaatccacttctatcagcacagctaagagactg
gccgagttcctgggagaccaaatggtgaaagatgctggtctgagctgtcgctacatcatc
tcccgaaaaccagagggctcgcctgtcacagaaagagccattcccctggctatctttcag
gcggagcccagtgtgaagaaacatttccttcgtaagtggttgaagatgcccagcctgcac
gatctggacatccgctctatccttgattggagttattacatcgagaggttgggtagtgcc
atccagaaaatcatcaccatccctgcagctcttcaacaagtgaagaatccagtacccaga
gtgcggcatcctgactggcttcacaagaaacttctggagaaaaatgatatctacaaacaa
aagaagatcagcgagctgttcaccagtgagggcaagagacaggtggcccatcagcctctc
gaaccgggccaagccgcagacatggaagactttggaaggccaccgagacctctgcagcca
gccatccccatcagcaccaagcggaaacgggcttctcagggagaggacagccaggtggag
tctcaggatgtggagctcactcagagctggagagagatcctggggccacccccaccttca
ggaaagacgcgggaggagcgtctagtgtggctacgttaccataagaagaagtgggagctg
cagctgaaacagaggaaggaaagaaagaagaagaggaggatgctggatggtgaagctcag
cctgtagggggaggagtgatccgagacgggcccatcaccggcctgggaagcttcctacgc
aggacggcacgcagcatcctggacatgccgtggcaaattgtgcagatcgcagagactagt
caccctggtctgtacaagctgtgggctgtgattgggaatgacctccactgcatgaagctc
aacatcccacgtgtcttctacgtcaatcagaaagtccccaaacaggaggaaggagctacg
tacaaaaaggtgaaccgcatgctgcctcgctccaacatggtgtactacctttatgagtac
tgcgtacccgaggacatgtaccaggagcacatcaacgagatcaacgccgacctctctgcc
ccagatatcgaaggcgtctatgaaacacaggtgccgctgctgtttcgtgccctggtgcgg
cttggatgtatgtgcatggtcaataaacatgttgtgagggatctggccggcagggaggct
gacacttttgacctggagcatctggagatgagatctttggcacagttcagttacctggag
cctgggagtgttcgccacatgtacctgtatcatcacagccagggtcacaaggctctgttt
ggcctcttcatcccctctcagcgcaaagccagcatctttgtcctggacacagtccgtagc
aaccagatgcccaatctgagtaacctgtacacagccgagcgcactgctctcctggagaag
acaactgaggagctcctgcctccggagaaacacaattttgaggtccgagctgaaaacgac
gtgaaggctatttaccgtgcactgcaacgcatcctgctgaactacaaggaggagcgtcgc
gggccgaccctcatcgcgatgcagtcaaactgggagttgcggcggttggcagcggggatg
ccggtgctcgaggagtttccagtcgttcctgtacacgtgcttgatgagatcagctataac
gtgctggactggcaacgccacggtgcccggcgcatgatccgccactacctcaacctggac
agctgcctgtcgcaagctttcgacatggccaggtattaccacttacctgtggggaacttg
cctcaggatgtgtccatcttcggctcagacttgttccttgcaagacatctacggaaacac
aaccacctgctgtggctttcacccacggctaggcctgacctcggaggaaaagaggctgat
gacagtcgtcttgtcatggagagtgatgacagaggctctgtggagatcaatgctcaagga
tgctactccacagtgtgtgtggagttggacctacagagtctggcggtgaacaccatcctc
cagtcacagcatgtcaatgacatggagggtggtgctagtctgggtgtcagttttgatgtg
atccagcaggcctcgttggaggacatgatgtcaggaaaccaaggagcgaccgctcttgct
agttatgatgagacagctctctgctccaacacattcaggatcctgaagagcatggtggtt
ggatgggtcagggagatcacacagtaccacaacgtgtatgcagacaaccaggtgatgcac
ttctatcgctggctgcgctccccgagctctctgctctatgaccctgcactgcaccgcacc
ctgcacaacatgatgaagaaggtgttcctacagttgatttcagagttcaaacgtcttggc
tccactgtcgtgtacggaaacttcaacaggatcatcttgtgtactaaaaaacggaggata
gacgacgccatcggctacgtagaatacatcaccaacagcatccactcccgagaaatcttc
cactctttgtccatctccttctcccgatgctgggagttcctgatgtggatggatcccgcc
aactgcggtggcgtgaagggcaagctgccctccagcatcttgtacggagaggaaggagcc
aaacagaagaaaaacaagcgaggggagggagatgaggagggtagcgaggatgaagatgag
cccgaagccgaggaagatgatgacggtgatggggagacggatgaggtggaggagttgatt
gagagtaactggaacatcatgcagtaccttccccaaactgcctcctgccagaaatacttc
ctcatgattgtctctgcctacattgcagcggtctaccacagcatgaaagaggagctgaga
cgtaacgctccaggggcaacgccagtcaagagacgtggaggcagccaggcttcccagcag
gcagtgggggacttgagtgctcttcctggaatgatctccttctcccaggaatatgtgtct
agcgagctgacacagaactttttcaccatcactcaaaaaatccagaagaaggtgactggt
acgaggagtgtgacccagccctcagagatgttccccgtcctgcctggatcccacctgcca
ctccacaaccccgcactggagtttatcaaatacgtctgccaggtcctttcactggacggc
aacatagtgaaccagatgaacaagctaaagagggacctcctgcgcctcgtggacgtcgga
gagttttcagacgatgcccagtttcgtgacccgtgtaactcctacatcctgccagaggtc
atctgccaccactgcaatttctgtcgtgacctcgacctctgcaaggacccatctgtggca
caagatggatcagttctgcctcagtggttttgctccaactgccaggcgcagtatgagacc
gagtctatcgagatggctctggtggaagctctgcagaagaaaatgatgagctacacactg
caggacctgatgtgcacaaaatgtaaaggagtgaaggaagcgaacatgcccctctactgc
agatgtgccggagactttgacctcactttcccaaccaagaacttctccgagcagatcacc
gtgtttcgaaacatagcatcccactacaacatgagcttcctggaggagaccattgactgg
ttgcttgttatgagcccacacatcggccagaacgctcactga
DBGET
integrated database retrieval system
