Larimichthys crocea (large yellow croaker): 104921315
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Entry
104921315 CDS
T04659
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104921315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104921315
03009 Ribosome biogenesis [BR:
lco03009
]
104921315
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104921315
Spliceosome [BR:
lco03041
]
Complex A
U2 snRNP components
U2 related factors
104921315
Complex B
104921315
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104921315
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
90S particles
Helicases
104921315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_25
Motif
Other DBs
NCBI-GeneID:
104921315
NCBI-ProteinID:
XP_010732106
LinkDB
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Position
III:7634033..7659131
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AA seq
769 aa
AA seq
DB search
MLAANMSKRTRLDLGEDYSSSKKKPTDGCVRRDRDRDRGRDERPRDRDRDRNRDRDYDRD
RDVKSSGVPSIPPPSSGGFYKQTPIQQQINPFTNLPHTPRYYEILKKRLQLPVWEYRESF
TDILMRNQSFVLVGETGSGKTTQIPQWCVDMVRSMPGPKRAVACTQPRRVAAMSVAQRVA
DEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERT
LATDILMGVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPE
PERDYLEAAIRTVIQIHMCEGDEGDALLFLTGQEEIDEACKRIKREVDDLGPEVGDIKII
PLYSTLPPQQQQRIFEPPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV
YNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSN
LGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFP
LDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMT
LLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFSSRDYY
TNIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNY
IRTCTDIKPEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKVSSKEYTQY
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgctggcggccaacatgtccaagcggactcgtttagacttgggtgaagattattcgtcg
agtaaaaagaaacccactgatgggtgcgtaaggcgtgatcgcgacagagacagaggcagg
gatgaacggccgagggacagggaccgcgatcgcaatcgagatcgagactatgacagggac
cgggatgtcaagtcatccggcgtgcccagcatcccacctcctagcagtggaggcttctat
aagcaaacccctattcagcagcagatcaaccctttcaccaacctgccccacacgccacgc
tactacgagatcctgaagaagcgtctgcagctgcctgtctgggagtacagagagagcttc
actgacatcctgatgcgtaaccagtcttttgtgttggtgggagagacaggctctggaaag
accacgcagatccctcagtggtgcgttgacatggtgcggtcaatgccggggccgaagaga
gcggtggcctgcacccagccccggagggtagcggccatgagtgtcgcccagagggtcgcc
gacgagatggatgtgatgctgggccaagaggtgggctactccatcaggttcgaggactgc
agctctgccaagacggtactcaagtacatgacagatggaatgctgctgcgggaggccatg
aacgatcctctgctggagcgctatggcgtaatcatcctggatgaggcgcacgaacgcaca
ttagccaccgacatcctcatgggggtcctgaaggaggtggtccgccagaggcctgacctc
aaggtcatcgtcatgagcgccacactcgacgctggcaagttccaggtgtactttgacagc
tgcccactgctaactatccccggacgcacgcaccccgtggagattttctacacgccggaa
ccagagcgggactacctggaggcggcaatccgcaccgtgatccagatccacatgtgtgag
ggagacgaaggggacgctctcctcttcctcaccggacaagaggaaatcgacgaagcctgc
aagcgaatcaagagggaggtcgacgacctggggcctgaagtcggcgacatcaaaatcatc
ccgctgtactcaacgttgccaccacagcagcagcagaggatctttgagccgccaccaccc
aataaaccaaacggtgccatcggaaggaaggttgtcgtgtcaacaaacatcgcagagacg
tccctcaccattgacggcgtggtgtttgtaatcgatcccggatttgccaagcaaaaggtg
tataacccacgtatcagagtggaatcccttttggttacggccatcagcaaggcctcagcc
cagcagagggcaggtcgtgccgggcggacacgcccaggaaagtgtttccgcctttacacg
gagaaagcatacaagacagaaatgcaggacaacacgtatccagagattctgaggtctaat
ctgggctctgtggtgctacagctgaagaaactgggcattgacgacctggtgcactttgac
ttcatggacccaccagccccagagaccctgatgcgagccctggagttgctgaactacctg
gcagcgctcaacgacgacggcgacctgacggagctgggctccatgatggcagagttcccc
ctggacccccagctggccaagatggtcatcgccagctgtgaattcaactgctcgaacgag
atcctctccatcactgccatgctgtcagtcccacagtgcttcgtccgacccacggaggct
aagaaggtggccgacgagtccaagatgcgcttcgcccacatcgacggagaccacatgacc
ctgctcaacgtctaccacgccttcaagcaaaaccacgagtccactcagtggtgctacgac
aatttcgtcaactaccgctcgctgatgtcggcagacaacgtgcgccagcagctgtccagg
atcatggaccgcttcagcctgccgcggcggagcaccgagtttagcagcagagactactac
accaacatccgccgggcgctggtcactggcttcttcatgcaggtcgctcacctggagcgc
acgggccactacctgacggtgaaagacaaccaagtcgtacagctgcacccctccactgtg
ctggaccacaagccggagtgggtgctttacaacgagtttgtgctcaccaccaagaattac
atccgcacgtgcactgacatcaaaccggagtggctggtgaaaattgccccgcagtactat
gagatgggtaacttcccccagtgtgaagcaaagagacagttggagcgtatcattgcaaaa
gtctcatccaaggaatacactcagtactaa
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