Larimichthys crocea (large yellow croaker): 104921576
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Entry
104921576 CDS
T04659
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04137
Mitophagy - animal
lco04140
Autophagy - animal
lco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104921576 (hif1a)
04137 Mitophagy - animal
104921576 (hif1a)
04148 Efferocytosis
104921576 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104921576 (hif1a)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
104921576 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
104921576
NCBI-ProteinID:
XP_027130453
LinkDB
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Position
XXIV:complement(10944100..10957259)
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AA seq
751 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQELPLPHSVSSSLDKASIMR
LTISYLRMRKLLSTDEPIAEEETDLDFQLNGSYLKALDGFFMVLSEDGDMIYLSENINKC
LGLAQFDLTGHSVFDFTHPCDHEELREMLIHKTGSKKAKEPNTERNFFIRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVSDNRTEQTNGQKEPPVPYLVLICDPIPHPSNIEVPLDTKT
FLSRHTMDMKFTYCDERITELMGYDPDDLLNRSVYEYYHAQDSDHLTKTHHNLFAKGQVC
TGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQDEKLILSLEQTEDVK
PVKEELQLEEEEAVVESSQPEMSPILPKEEVEEKVSKSDVIKLFTRAIESETLVSLYDQL
KEEPEALTLLAPAPGDTIVPLDFSCSDPEIQLPLYKDVMLPSTSDKLALPLSPLPPSEPL
HVTTATSEDTKTERYDPSPSTTTASSSEADSPLDFCFPMDSDMSSDFKLDLVEKLFAIDT
EPKTPFTTQAVEDLDLEMLAPYIPMDDDFQLRSLPQEEPLSCGPVKSLDSSPVCVTKDIQ
SYPSSPFSSPGSRTASPAPPEPVNTSHLATILAMRTTQLGNEVSLRTLAAQNSQRKRKLC
DIKEMIGQGTLRQEELEQGKKLKASESGTTTILLLPSDLASRLLGSTSENTSSLFTLPQL
TRDDCEVNAPLQGRQYLLQGEELLRALDHVI
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtaccagaaaagaaaagggtgagttcggagcggagaaaggagaag
tccagggatgccgcacgatgccggcgtgggaaggagtcggaggtgttctacgagctggcc
caggagctgcccctgccccacagcgtcagctccagcctggacaaggcctcaataatgagg
ctcacaatcagctacctgcgcatgaggaaactgctcagcactgatgagccaatcgcagag
gaggagacagatcttgatttccagctcaatggctcctacctaaaggctctggacggcttt
ttcatggtgctgtctgaagacggagatatgatctatctgtcggagaacatcaacaagtgc
ctcgggctggcacagtttgatctgaccggacacagcgtgtttgacttcacgcatccctgt
gaccacgaggagctgagggagatgctgatccacaaaacaggctccaaaaaggccaaggaa
ccaaacacagagcgcaacttcttcatccggatgaagtgcactctcacaagccgcggccgc
accgtcaatgtcaaatcagctacatggaaggtgctccactgctcaggtcatgtccgtgtc
agtgacaaccgcaccgagcagacaaacgggcaaaaggaaccacccgtcccctacctggtt
ttaatctgtgatcccatcccacacccctccaacatcgaggtccctctggacaccaagacc
ttcctcagccgccatacaatggacatgaagttcacatattgtgacgagaggatcaccgag
ctcatgggttatgatccagatgacctgttgaatcgttctgtgtacgagtactatcacgct
caggactcagaccatctcaccaagactcaccacaacttgtttgcaaagggccaggtctgc
acaggccagtacaggatgttggccaagagaggaggctttgtgtgggtggaaacccaagcc
actgtcatctacaacaacaagaactctcagccacagtgtgtcgtctgtgtcaactttgtg
ctcagtggcatccaggatgagaagctgatcctgtctctggagcagacagaggatgtgaaa
ccagtgaaggaggagctgcagctggaggaagaagaggctgtagtggagagcagccagccc
gagatgtctccaatcctgccgaaggaggaggtggaggagaaggtctcaaaaagcgatgtg
atcaaactgttcactcgggcaatagagagcgagacgctggtcagcctgtacgaccagctg
aaggaagagcccgaggctctcaccctgctggcccctgctcctggagacaccatcgtcccc
ctggacttcagctgctctgatccagagatccagctccctctttacaaagatgtaatgctt
ccctccaccagtgacaagctggctctgcctctttcccctctgccacccagcgagcctctc
cacgttaccactgccacttctgaggatacaaaaactgagcgctatgatccatccccttcc
actacaacagctagctcatcagaggctgacagtccactggacttttgtttccccatggac
tcagatatgagctcagatttcaaactcgacttggtggagaagctgtttgccatcgataca
gagcccaagactcctttcactacacaggcagtggaagacttggatctggaaatgttagct
ccctacattcccatggacgacgacttccagctacgcagtctgccccaagaagagcctcta
tcttgtggaccagtcaaatcccttgacagctctccagtctgtgtcactaaggacatccag
agctatcccagctccccattcagctcaccaggcagccgcacggcgtccccagcaccacca
gagccagttaacacctctcatcttgccaccatccttgctatgaggaccacacagctgggc
aacgaagtctcgcttcggactttggcagcgcagaactcgcagcgcaaaagaaaattatgt
gacataaaagagatgattggacagggaactctgcgccaggaagagctggaacaaggcaaa
aagctgaaggcttcagagtcaggaacaacgaccatactgttgctgccttcagatttggcg
agtcgtctgctgggaagcacgtcagagaacaccagttccctcttcacactgccgcagctc
acccgcgacgactgcgaggtcaacgcccccttgcagggtcgtcagtacctgctccagggg
gaggagctgctgcgcgctctggaccacgtcatttga
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