Larimichthys crocea (large yellow croaker): 104921582
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Entry
104921582 CDS
T04659
Symbol
six4
Name
(RefSeq) homeobox protein SIX4
KO
K15615
homeobox protein SIX4
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104921582 (six4)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
104921582 (six4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
DUF6374
Motif
Other DBs
NCBI-GeneID:
104921582
NCBI-ProteinID:
XP_010732463
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Position
XXIV:11041525..11048192
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AA seq
681 aa
AA seq
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MSSSSAGEVTTANDIKRENVKEVDTRECIKLVALDAAELSMERTTPNTDAVRTELLVSAA
SSLAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQSRYQ
ELYSILENHSFSPSNHTFLQDLWYKARYTEAEKARGRPLGAVDKYRIRRKYPLPRTIWDG
EETVYCFKERSRNALKDLYNQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSE
AQSKSESDGNHSTEDESSKGQEELSPRPLSNSSDGVISHGTLPIQTGPLDSGVVIQQIGD
IKLPPGSSSGGLYNGSLVTSNTSSTVFHNGGSSYLHTPGNILFNGLNLGIQPLAFNSLRP
SGGVLLGGSGVDMQMQTGQEKGLGNSAEDSALQYASYSGCVNGAEVKLEGVHTMPAQNGG
SSVLTFSSSSGALQLGGYSLVQVPSGVPDSDGNSLLSSDVGLPPLQLSSASSSSAITQQG
TMPLNNVAVSSSNDDSFQQDKLSMTSLHHSTVLYNMSNAGQPSIKKEPLEGGVYSSYHHG
LHLDPNGQLSYTNPNSEEVPSSQGPTSTTEVTAVSSSSPEPEVYTTLTVSTPLMAQTDPS
SHHLQPTEYLGGHEVRGPPSSHLMGSGMNSNYMNLSENKVGGTGTSVNEMVRAMCGEMEA
VEGKELAKLQTVQMEEDMADL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttctgccggagaagtcacaacagcaaatgacatcaagagggaaaatgtg
aaggaggtggatacgcgggagtgcatcaagcttgtggcgctggacgcggcggagttgtcc
atggagcgcacgactcccaacacggacgcggtgcgcacggagctgttggtgagcgccgct
tcctctctggctttctccccggagcaagtggcttgtgtctgcgaagctttgcagcaggga
ggcaatgtggaccggcttgccaggttcctgtggtccctgccacagagtgacctgctacgc
ggcaacgaaagcatcctgaaagcccaagccctcgttgctttccaccagtctcggtatcag
gagctgtacagtattttggagaaccacagtttcagtccgtccaaccacacctttctgcaa
gatctgtggtacaaggcccggtataccgaggcggagaaggcgcgggggagacccctgggc
gccgtggacaagtaccggatccggagaaagtaccctctccccaggactatctgggacggc
gaggagactgtgtattgtttcaaggagaggtcccgaaacgcgctgaaggatctgtataac
cagaataggtacccctctccagccgagaaaagaaatctcgccaagattacaggactctcc
ttgacccaggtcagcaactggttcaaaaacaggagacagagagacagaaacccgtccgag
gcacaatcaaaaagtgaatccgatggaaaccacagcacagaggatgagtccagcaaaggc
caggaggagttgtctcctcggcccctctctaactcctcagatggggtgatctcccatggg
acccttcccattcaaacagggcctctggacagtggggtggtcatccaacagatcggggac
atcaaactgccccccggatccagcagtggtggtctctacaacggaagtctagtgaccagt
aacacctcctccaccgtgtttcacaacggtggctcgtcttacctccacacacctggaaac
atcctcttcaacggtctcaatttgggtatccagcctttggccttcaactctctgaggccg
tctggaggggtgctgctgggggggtcgggagtggacatgcagatgcagacaggtcaggag
aagggactgggaaattctgctgaggactcagccctgcagtacgcctcctactcaggctgt
gtgaatggagcggaggtgaagctggagggggttcacaccatgcctgcccagaacgggggc
tcatctgtgctcacgttcagctcctcgtcaggtgccctccagctgggtggctacagtctg
gtccaggtaccgagcggagtcccagacagcgatggcaactcattactcagcagcgatgta
ggtcttcctccactgcagctctcttctgcctcatcttcctcagcaatcacacaacaaggt
accatgcctctgaacaatgtagcagtgagctcctccaatgacgactcgttccagcaggac
aagctgagcatgacgtccctgcaccacagcacagtcctctataacatgagcaacgctggc
cagccgtccatcaagaaagagcctctggagggaggagtctactcctcgtaccaccatggg
ctccacttggaccctaacggtcagctcagctacaccaaccccaattcagaagaggttcct
tccagccaaggtcccacctcaaccacagaggtcaccgccgtcagctcgtccagccctgag
ccagaggtctacaccaccctcaccgtcagcacgcccttgatggcccaaacggaccccagc
agccaccacctccaacccacagagtatctcgggggccacgaggtccggggcccgccgtcc
tcgcacctgatgggctctggcatgaacagcaactacatgaacctttcagagaacaaggtg
ggcggcacgggcacaagtgtgaacgagatggtgcgggcaatgtgcggggagatggaggcc
gtggaggggaaggagctagccaaactacagacagtgcagatggaggaggacatggctgac
ctttaa
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