Larimichthys crocea (large yellow croaker): 104921610
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Entry
104921610 CDS
T04659
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lco03009
]
104921610 (pdcd11)
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
90S particles
Other 90S particles
104921610 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_14
TPR_19
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
OB_RRP5
UTP6_C
TPR_16
TPR_CcmH_CycH
ARM_TT21
DUF2110
ARM_TT21_5th
TPR_15
DUF1344
PPR
TPR_12
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
104921610
NCBI-ProteinID:
XP_019115722
LinkDB
All DBs
Position
X:13110199..13122773
Genome browser
AA seq
1809 aa
AA seq
DB search
MASVEEDFPRGGTAKKHAESKIVVQRTEVDNLFQSNEPVETKKRKGAVKDDGKKLKKPKT
GKEKEGLTLNAAAKCVEILHLKNVKEGMLMLGSVKEVTDFEVTVSLPCGMQGYLSIKHIC
DSYAKLLTEQLDSADTEEICSLPHLLYPGMVFRCMVAKLDTAKSGSLSIRLSIDPKQVNK
ALTSSSLKAGMILSGCVESVEDHGYIVDIGIKGTKAFLPRKSVKDKHNNSEELKVGQYLT
SQVEEVKNEGRVVHLSVSPPNVAQAYAEPEQGWNLTNLLPGLLVKATIKKVTKHGLILDF
LSSFSGQVDFLHMEPDQASSYTEGAEVRACVLYVEPSTRLVALSLRSYLLQPGAKVDPLP
AGGDRIGEVVKDCKMTAMHHMSGAMLELPDKTKAFVHRNHLKESKEPSNENRVMAMPEHT
CRILDFSPMDQIHFVSLRKTMIEKPFYRYHDLQAGQIVEGTVSVLLHHGMVVHLSDHIKG
LVPRTHLSDILLKNPEKKYMEGMKIKCRVLTVEAENKKLYLTRKKALIESPLPLFLSYAD
ARPGRVSHGYVVCIKDFGCIVRFYNNVKGLVPLRELSSEPILTPQEVFYVGQVLKAKVLQ
CDPDKSKMVLSFKAAVEGVTEAPPKPEFDCEVGKRLEARVLKKLLNGLEVAILPDEFRAV
LPTMHLSDHMSNCPLLWESLQEGDSVSNLICFNNTKQNVSLTKKPTVRWSLEEGVVAKDF
SEIKVGMQLIGWIKNIMAYGVFVEFPYGLVGLAPKSAMTDKFLSDTTAAFQLGQTVFAKV
TNLDEEKRRFLVTLKISEVTSPEGDVQTRLINGLQERKVVTEMLAMRDNSDLHQQLAALS
VGEKLKLTVDTVTDSGAIFTSDDLAGATIQATKHHVMGSKLTPGQKVTAAILHIDIMSTC
IHVSILSKLLGKKKSLTEGSKYTAIIQHIDKDFAVISLDDTAQLTVIQTRSHLNEVSLFE
SDKLKAGMTLAVEVIEPSCQEVQGLALVSWHRTASKRQRTASENQPGSKGHCFGDIVQGK
VRTVKPTSIQITLEDGSTGNVHVSEVVEVSEVCQGYFPTSSVKVGSMVTARVIGGREASS
HRFLPFSHPKYTYTIPELTLILSKLDKSTNLKPVTPKDKLNSYKVGEEITCFVSKFNPEK
KSLEVTSDLCVTGTVELLAMITDPKDAGHPEKLYKLGQAVRAQVVEVNAKPQRLVLSLTG
VHKLEKGTVTLGMVTNILPQVGLMVKLPFGSMGTVAVTDLADAYKPNLLKGYSKNQLLRC
FLLGSENGKWRLSLRPSRLNPQQAKPVKDPEVLSINELKTGQIIRGFVKSVGEQGIFIRL
SWSITGRAELQKSTKYFVSNHKVLSEHLPPNTLLTTKIASIDKEEELVNLSLLQEDTGKP
DILPESLSLPLRLIGEEKKTYDQKKKRKLSESEQKQAEVPKKKKKKTKKAKTDDSDSGVE
VYFREEEEDEEEPKSDAQVMQSSVGPSRLQVAAGFSWDVGLSSLKPASTAEEADFSDGED
QDRSSKPQKKTRHELEQEKKAAEKALVEREAQLMDPSLRPQDSAAFERLLLGSPNSSLLW
LQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFE
RAQQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLNYGTFLLQQGQSD
AASALLQRALKSLPSKESVDVIGKFAQLEFRYGDAEKGRAMFDKVLTSYPKRTDLWSVFI
DLMVKHGSQKDVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPQSVQAVKEKAMEFV
EAKGTEAAN
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaagaggacttccctcgaggggggacggcaaagaaacatgctgagagt
aaaatagtggtgcagcggacagaagtggacaacttgttccagtcaaacgaaccagtggaa
actaagaaaagaaagggggcggtcaaagatgacggcaagaagctcaagaaaccgaagacg
ggcaaagaaaaagaaggtctgacgctgaatgcagcagccaagtgtgtggaaatcctacat
ctcaagaatgtgaaggagggtatgctgatgctgggcagtgtgaaggaggtaacagacttt
gaggtgactgtcagcctcccttgtggcatgcaaggctacctgagcatcaagcacatctgt
gactcgtacgccaagctgctcacagagcaactggattcagctgatacagaggagatctgc
tctttaccacacctcctctaccctggcatggtgttcaggtgtatggttgccaagttggat
acagccaaaagtggctctctaagcatccggctgtcaatcgatccaaagcaggtcaacaag
gctctcacctcaagctctctgaaagctggcatgatcttgagtggatgtgtggagagtgtg
gaggatcatggctacatagttgacatcggcatcaaaggaaccaaagccttcctacccagg
aaatcagtaaaagacaaacataataactcagaagagctgaaagtgggtcagtatctgact
tctcaagtggaagaagtgaagaatgaaggacgtgtggtccacctttctgtcagccccccg
aacgtcgcacaggcctatgctgaacccgagcagggctggaacctcactaaccttctgcct
ggtcttctggtcaaagctacgatcaaaaaggtgaccaaacatggactgatcctggacttc
ctgtcctccttcagtggccaggtggactttctccacatggagccagatcaggcatccagc
tacacagagggagccgaggttcgggcatgtgtgctgtatgtggagccgtcaactcgcctg
gtagccctgagcctgcgcagctacctccttcagcccggggccaaagttgaccccttgcct
gctggaggtgatcgcattggagaggttgtgaaggactgcaagatgactgctatgcaccac
atgtctggagccatgttggaactgccagacaaaacgaaggcctttgtacataggaaccac
ctgaaggagtctaaagagccgtctaatgagaacagagtgatggccatgcctgagcacacc
tgcaggatcctggacttcagccctatggaccaaattcattttgttagtctgcgcaagact
atgattgagaagcctttttatagataccacgatcttcaagctggtcagattgtagagggg
acggtgtcagtcctgctgcatcatggcatggtggttcatctgtctgaccacattaaaggc
ctggtgcctcgcacccacctgtctgatatcctcctaaagaacccagagaagaagtacatg
gagggcatgaagattaaatgtcgggtgctgacagtagaagcagagaataagaagttgtac
ctgaccagaaagaaggccctgattgaaagccccctgccattgttcctcagctatgctgat
gcccgtccaggccgcgtgtcccacggatacgtcgtctgcatcaaagactttggctgcatc
gttcgtttctacaacaatgtcaagggactggtgccgctcagggagctcagctcagaaccc
atcttgacccctcaagaggtcttctacgtggggcaggtgttaaaggctaaagttcttcag
tgtgaccccgataagtcgaagatggtgctgtcatttaaggctgcggtggagggagtcaca
gaggcccctcccaaaccagagtttgactgtgaggtggggaagaggctggaggccagggtc
ctgaaaaagttactcaacggcctagaggtggccatcctccccgatgagttccgtgccgta
cttccaacaatgcatctttctgatcacatgtccaactgccctctgctgtgggagagcctg
caggagggagacagtgtctcaaacctcatctgcttcaacaacaccaaacagaatgtcagc
ctcaccaagaaaccgacagtgaggtggtcactggaggaaggagtggttgcaaaggatttc
tctgaaataaaagttggaatgcagctgattggctggatcaagaacatcatggcctatggc
gtctttgtagagttcccatacggccttgttggtctcgcacccaagtcggccatgaccgac
aagttcctcagtgatacgacagctgccttccagctgggccagacggtgtttgctaaagtg
accaacctggatgaggagaagcgacgtttcctggtcacgctgaagatttcagaggtcacg
tctccagagggtgacgtccagaccagactcattaatggtctgcaggagagaaaagtggtg
actgaaatgttagcgatgagagataacagtgatctccaccagcagctggctgctctgtct
gtcggcgagaagctgaagctgactgtagatactgtgacggacagcggtgccatctttacg
tctgatgatttggccggtgctaccatacaggccaccaagcaccacgtcatgggttcaaaa
ttgaccccaggacagaaagttactgcggccatcctccatattgacataatgtcaacatgt
atccatgtgtccatcctttccaagctgttggggaagaagaaatctttaaccgaaggctca
aagtacacagcaataatacagcacatcgacaaagactttgccgtcatctcactggacgat
acggcacagctgactgtcatccaaaccaggagccacctgaacgaggtctccctgttcgag
tcggacaagctgaaagcaggcatgactttggccgttgaggttatagaacccagctgtcag
gaggtgcaggggctcgctcttgtgtcgtggcatcgtactgcctccaaacgacagcgcacg
gcctcagagaaccagccaggctccaagggtcactgctttggcgatatcgtgcagggtaaa
gtgcggacggtgaagcctacctccatccagatcacactcgaggatggaagcacgggcaac
gttcacgtgtctgaagtggtggaggtctcagaagtgtgtcagggatatttccccacatcc
tcggttaaggtgggcagtatggtcacagccagggtcattggaggacgagaagcctccagt
cacagattcttgcccttctcccatcccaaatatacatacaccattcctgagctcacgctt
atactcagcaaactggataagagcacaaacttaaaaccagttacaccaaaagacaaactg
aacagctataaggtcggagaagaaatcacatgctttgtatcaaagtttaatccagagaag
aagtctttggaggtcaccagtgatctatgtgttactgggacagttgaactgctggctatg
atcactgatccaaaggatgccggccacccggagaaactctacaagctgggccaagcagtc
cgtgcccaagtggtggaggtgaacgccaaacctcagcgcctcgtgctctcactcactggt
gtccataagctggagaaaggcactgttactttggggatggtgactaatattctgccacaa
gttggcctaatggtcaaacttccctttggcagcatggggactgttgctgtcactgacctg
gctgatgcctataagccaaacctcttgaaagggtacagcaagaaccagctgctcaggtgt
ttccttcttgggagtgaaaatggcaagtggcggttgtctctacgtccatcaaggctgaat
ccacagcaggccaagccggtgaaggacccagaagttttgtctataaacgaactgaagaca
ggccagatcatcagaggcttcgtcaagtctgtgggagagcagggaatcttcatcaggttg
tcctggagcatcacaggaagagctgaacttcagaaatctaccaagtactttgtcagcaac
cacaaggtcctctctgagcatcttcctcccaacaccctgctcactaccaagatcgccagt
attgacaaagaggaggagctggtcaacctatctctgctccaagaggacaccgggaagccc
gacatccttccagaatctctcagtctgccgctacgtctgatcggagaggagaagaagaca
tacgatcagaagaagaaacgcaaactgtctgagagtgaacagaaacaggcagaggtccca
aagaaaaagaagaagaagacaaagaaagcaaagactgatgacagtgacagcggagtggag
gtatacttcagagaagaagaagaagatgaagaagagcccaaatctgatgctcaggtgatg
caaagctcagtgggtccatccagactacaggtggcagcaggtttctcttgggacgtagga
ctgagctccctgaagcctgcgtccacagcggaggaggcggacttcagcgatggagaggac
caagacagaagcagcaagccccagaagaagactcgccatgagctcgagcaggagaaaaag
gcagcagagaaggccctggtagagcgcgaagctcagctgatggatccgagcctgcggccc
caggattcagccgccttcgagcgcttgctgcttggttcacccaacagctccttgctttgg
ctacagtacatggctcaccatctacaggctacccagatcgagcaggcccgcgctgtggcc
gaaagggccctcaaaaccatctccttcagggaggagcaggagaagctgaatgtgtgggtg
gccctgctgaacctggagaacatgtatggcacagaggagagcctaaagaaagtttttgag
cgggcgcagcagttctgtgagcccatgcccgtttaccagcagctggctgacatctacgca
aagtccgacaagaccaaggaggcagagggcctgtataagacgatggtgaagcgtttccgt
cagaataaggcggtttggctgaactacgggaccttcctgctccagcagggtcagagtgac
gctgccagtgctctcctgcagagggcgttgaagagcctgccctccaaagaaagtgtggat
gtgatcggcaagttcgctcagctggagttccgctatggcgatgcagagaaaggtcgtgcc
atgtttgacaaagtcctgacgagctatccaaaacgtacagacctctggtccgtcttcatc
gacctcatggtcaaacatggatcacagaaggatgtcagggcactctttgatcgtgtgatc
cacctgagcgtttcagtgaaaaagatcaagttcttcttcaagcgctacttggagtacgag
aagaagaacggcaccccacagagcgtccaggcagtcaaagagaaggccatggagtttgtg
gaagctaaaggcaccgaggctgccaactaa
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