Larimichthys crocea (large yellow croaker): 104921613
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Entry
104921613 CDS
T04659
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104921613 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104921613 (taf5)
03036 Chromosome and associated proteins [BR:
lco03036
]
104921613 (taf5)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104921613 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
104921613 (taf5)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104921613 (taf5)
STAGA complex
104921613 (taf5)
TFTC complex
104921613 (taf5)
SAGA complex
104921613 (taf5)
SLIK complex
104921613 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
VPS8_N
PROPPIN
LisH_TPL
Beta-prop_WDR11_2nd
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
104921613
NCBI-ProteinID:
XP_010732503
LinkDB
All DBs
Position
X:13103851..13108822
Genome browser
AA seq
750 aa
AA seq
DB search
MAAVQGGMVDSYEEKDIKTEPPNDGGGNNNANDGRLLSPSPGSSASSAGSNKSVAGAPED
QQTLLAVLQFLRKNKLTESVEILRREAGLPEDSLDLKGGDSSGAGSGGAAGGVDLESGDA
SALLSRVTVSSSAAAQAPTKAPGEDQPDVNVVLSAYSQQGDPALYGVYYSGLKKFIESVL
DCHRAELSQVFYPLFVHMYLELVYNNHENEAKVFFEKFSGDQECYYEDDLRILSSLTKKE
HMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSK
SQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDS
MGSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNA
YQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMD
EKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVW
DTQFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVATGSSDR
TIRLWDVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELKG
HTDSIYSLKFSRDGEILASGSMDNTVRLWDSLKAFDDLETDDFTAATGHIHLQDNSQELL
LGTYMSKSTPVVHLHFTRRNLLLAAGSYNP
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtatggtggactcgtacgaagagaaagacataaaaacagag
ccaccaaacgacggcggcgggaataataatgcaaacgacggcagacttctctctccgtcc
cccggctccagtgcttcttcggctgggagtaataaaagtgtggcgggagccccggaggac
cagcagacgctgctggcagtactacagttcctcaggaagaacaaactcactgagtccgtc
gagatattgcgccgtgaagcgggattaccggaggactcactggacctgaaggggggagac
tcatccggtgcaggctcgggtggtgctgcgggcggtgtggacctggaaagcggggatgcg
agcgctcttctcagcagggtgaccgtctcatcctccgctgcagctcaggcgccaaccaaa
gctcctggtgaagatcagccagacgtcaacgtggtgctgtcagcatacagccagcaggga
gacccggctttatacggggtttactacagcggcctgaagaagttcatagaatctgttttg
gactgtcaccgagcagagctgtcccaggtcttctacccactgtttgtgcacatgtatctg
gagctggtgtacaacaatcacgagaatgaggccaaggtgttctttgaaaagttcagtggg
gatcaagagtgctactacgaggatgacttgcgtattttgtccagcctgaccaagaaggag
cacatgagaggcaatgagaccctcctggacttccgcaccagcaagtttgtgctgcgtatc
tcacgtgactcttaccagctgctcaagaggcacctgcaggagcgtcagaacaaccagatc
tggaatatcatccaggagcacctctacattgacatctttgatggcatgccacgcagcaag
agccagattgacgccatgtctggcagcttggctggagaggccaagcgagaggccaataag
gctaaggtttactatggactgctgaaggaaccagaaattgagcttcctctcgatgatgag
gacgaggaggctgagaacgaggaggggaaacccaagaagaagaaacccaagaaggacagc
atgggctccaagagcaagaagcaggacccgaatgcaccttcacagacgaggatacctctt
cctgaactaaaagattcagacaaattggacaagatcatgtacatgaaggaggccaccaag
cggatccgcctgggaccagataacctcccctccatctgcttctactcttttctcaatgct
taccagggtctgactgcagtggacttcacagatgactccagcctgattgcgggaggcttt
gctgactccacggtacgggtgtggagcgtcacgccgaaaaagctccgcaaggtcaagtct
gcagcagacttgaatctgattgacaaagagtcagacgatgtgctggagaggatcatggat
gagaagacggccagcgagtcaaagatcctctatgggcacagtggaccagtgtatggcatc
agcttcagtcctgacagaaactatttgttgtcaagttctgaagatggtacaatcaggctg
tggagtctccaaacatttacctgtctagtgggctacaaagggcataactacccagtgtgg
gacacccagttttctccccatgggtactattttatctctggaggacatgacagagttgct
cgtctgtgggcaacagatcactaccagcctctgcgaatgttttccggtcacctagctgat
gtcacttgcacccgcttccaccccaactccaattacgtcgccacagggtcgtctgatcgc
accatccgcctctgggatgtcctgactggaaactgcgtccgcatcttcaccggtcacaag
ggtcccatccatgcgctggctttctctcccaatgggaagttcttggcttcaggagccact
gatggcagagttcttctgtgggacatcggccatggacttatgattggagaacttaaaggc
cacacagacagcatctactccctcaagttcagcagagatggagagatcctcgcctccggc
tccatggacaacacggtgcgtctgtgggattctttgaaagcatttgatgatttagagact
gatgatttcacagcagctacagggcacatccatctacaagataactcgcaggagcttctg
ctaggcacctacatgtcgaaatccacgcccgtcgtacaccttcacttcacccgcaggaac
ctgctactggccgctgggtcctacaatccatga
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integrated database retrieval system
