Larimichthys crocea (large yellow croaker): 104921766
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Entry
104921766 CDS
T04659
Name
(RefSeq) tripartite motif-containing protein 16
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104921766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104921766
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104921766
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104921766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
RING_XB3-XBAT31
ANCHR-like_BBOX
zf-RING_5
Trypan_PARP
HMGL-like
BTB
Mer2
MRP-S31
TMEM106_N
Motif
Other DBs
NCBI-GeneID:
104921766
NCBI-ProteinID:
XP_019111089
LinkDB
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Position
XIX:2597468..2604511
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AA seq
797 aa
AA seq
DB search
MSAKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMGCIKDYWSKDDPKGIYSCPQCRQTFC
PKPSLSRNTMLAEAVEQLRKGAHKADVRESMRSARGVASSSSKSKEKLSSSDVTCDLCKG
EQRRAVRSCLVCMSSYCEAHLKPHKTKKSLKEHELIAPTSNLAEKICTQHKYLQEFYCRQ
CKMFVCWLCTSNQHKGHECVSTKAERLEKQKVLSEMQAENQQRLKDREQELKDMKKMMEA
MKRSGERVHGDSEQALSELLRSVERLQELLEDVLDQAGLEKMNQAQEVTDSLEAEIKELK
KRDTEMKDLARCEDHIYYLQTCESMCIPLETGDLPPVMANPEASFEPVREAILDLREKVE
DLCNQELSKITKQVNDTTLFTLGDPNRQKGGIFKLFSGLASRNTNSRAPAPTPSLGVRGT
DRRGLGIGLKSLDVRSRDTPRDRGNTSSPRQRREERETVRETNPRPSPRPSPTPSRRESQ
SLWSRSSQIQPAAPAPTPIQATPTPTPAPAPAPAQATGFSRMASISSLFRSHRRGTTPAT
PVNNTPPAGGNPWGMSAVPETPTEINPDLFLDLPTPNHTPAFPAFREINLDSIQAPEPRT
REEFLQYSVSLTLDPNTAHRRLALSEGNTKATLQAAGQPYPDTPQRFDGWTQVMSQTPLY
AERSYWEAEWRGRGSSMGVAYGALNRKGSDARSGLGYNAQSWTLELSDTCCAAMHDNDKR
DIPVTYSPRLGIYLDLSMGTLAFYSVAESMTHLHTFRANFTQPLYAVFAVGSGVGVGLDF
ALGQFSSSTDSVKLCPM
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctaaactgtggacagaggaacagtttaactgccccgtgtgtctggacctccca
aatgatccggtcaccatcccctgtgggcacagctactgcatgggttgcatcaaggactac
tggagcaaggatgatcccaaggggatctacagctgcccacaatgtcgtcagaccttctgc
ccaaagccctccctgtccaggaacaccatgctggctgaggccgtagagcagctccgcaaa
ggggcccacaaagctgacgtgcgtgagtccatgcgaagcgcccgtggggtcgcctcgtct
tcatccaaatccaaagagaagctctcctcctcagatgtgacatgcgacttgtgcaaagga
gaacagcgacgggcggtcaggagctgcctggtgtgtatgagctcatactgcgaagcccac
ctgaagccccacaagaccaagaagtccctgaaggagcatgagctgatcgcacccacgagc
aatctggctgagaagatttgcacccagcacaagtaccttcaagagttctactgccgccag
tgcaagatgttcgtctgctggctgtgcaccagcaaccaacacaaaggccacgagtgtgtg
tccacgaaggctgagcgccttgagaaacagaaagtgctgtcagagatgcaggcggagaac
cagcagaggctgaaagacagagagcaggagctgaaagacatgaagaagatgatggaggcg
atgaagcgttctggagaacgggtgcatggtgactcggagcaggcgctgtcggagctgctg
cgctcagtggagcgtctgcaggagctgctggaggacgttctggatcaggccggcctggag
aagatgaaccaggctcaggaggtcacggacagcctggaggccgagatcaaggagctgaag
aagagggacacggagatgaaggacctggcccgctgcgaggaccacatctactacctacag
acatgtgagtccatgtgcatccctctggagacgggggacttgccccctgtgatggctaat
ccagaagcttcctttgagcctgtacgagaagccatcctggacctcagggagaaagtggag
gacctgtgtaaccaggagctgagcaagatcaccaaacaagtcaatgacacgacactgttt
accttgggagaccccaaccggcagaaaggagggatttttaaattgttttctggactggct
tctcgcaacacaaacagtcgtgcaccagctcccacaccctcactcggagtgcggggtaca
gacagacgaggacttggcataggccttaaaagcctagacgtgaggagcagagacacaccg
cgagacagaggaaacacaagctcacccagacagagaagagaggaaagagagacagtgagg
gagaccaacccaagaccgagccccaggcctagccccactcccagccgcagagagtctcag
tctctttggagcaggtccagtcagatccagcctgcagccccagccccaactccaatccaa
gctacccctacccctactcctgctccagctccagctcctgcacaagcaactggtttcagt
cggatggcatcaatcagcagcctcttccgctcccatcggcgtggcaccacccccgctacc
ccagtcaacaacacaccgcctgcaggaggaaacccatgggggatgtctgctgtacctgaa
actccaacagaaattaaccccgatctctttttggatctgcccacacccaatcacactcct
gctttccctgcattcagagaaatcaaccttgacagcatccaggccccagagccaaggacc
agagaggagttcctacagtactctgtgtccttgacccttgatcccaacacggctcacaga
cggctggctctctccgaaggcaacactaaagccaccctgcaggcggcagggcagccctac
cccgacactccccaacgcttcgatggctggacccaggtgatgtcccagaccccactgtac
gcagagcgctcttactgggaggcagagtggagaggcaggggttcctctatgggcgtagcc
tacggtgcgttgaacaggaagggctcagacgccaggtccgggctcggttacaacgcccag
tcctggaccttggagctgtcggacacctgctgcgcagccatgcacgacaatgacaagagg
gacataccagtcacctattccccccgcctgggcatctacctggacctgtccatggggacg
ctggcgttctacagcgtggcagagagcatgacacaccttcacaccttccgagccaacttc
acccagccgctctacgccgtcttcgcggttggcagcggtgtcggggtgggtctggacttt
gctcttggtcagttcagctccagcaccgacagcgtcaagctctgtcccatgtga
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