Larimichthys crocea (large yellow croaker): 104921948
Help
Entry
104921948 CDS
T04659
Symbol
htt
Name
(RefSeq) huntingtin isoform X10
KO
K04533
huntingtin
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104921948 (htt)
04131 Membrane trafficking [BR:
lco04131
]
104921948 (htt)
03029 Mitochondrial biogenesis [BR:
lco03029
]
104921948 (htt)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104921948 (htt)
Membrane trafficking [BR:
lco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
104921948 (htt)
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
104921948 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
104921948
NCBI-ProteinID:
XP_010732941
LinkDB
All DBs
Position
X:complement(39215471..39245484)
Genome browser
AA seq
3160 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLARITKRQEETVQETLAAAMPKI
MAALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWLLNVL
LGLLVPVDEEHPSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMRKEADVQPTPEQLL
QVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSIQHATVFRQDAESRA
RSGSILELIAGGGSSCSPLLLRKQRGKMLSGEEDGLEDDAERTEVTTGSFTASVVGADGS
SVAQVDIITEQPRSSQHTLQPGDSVDLSASSEQGGGGGGTSASDTPESPNDNEEEMLSRS
SSGGANITPETADYTTPENATPEGGPLGEGGTLLSTNDRSLPPSDSSQTTTEGPDSAVTP
SDVAELVLDGSESQYSGMQIGTLQDEEDEGAAPSTQEEPPEPFLQSALALSKPHLFEGRG
HNRQGSDSSVDRLIGFKDEPAEPEPDNKPSRIKGPIGHYTDPGVEPLVHCARLLAASFLL
TGQKNGLTPDKEVRVSVKALAVSCIGAAAALHPEAFFNSLYLEPLDGIPVAEQQYISDLL
GLIEHGDPQIRGATAILCGAIIQAALTKTRYNIHTWLASVQSATGNPLSLVDLVPLLQKT
LKDESSVTCKMACSAVRHCIMTICSSTLSELGLQLVIDLLALRDCSYWLVRTELLETLAE
MDFRLVNFLERKTETLHKGAHHYTGRLRLQERVLNDVVIRLLGDDDPRVRHVAASAVSRL
VSRLFYDCDQGQADPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGFNLSNAVP
DVTLENNLSRVVTAVSHAFTSSTSRALTFGCCEALCLLALNFPVCTWSTGWHCGYVSSNS
SFSSRSSLNRSRGRALSVSQPGNTPASSSTSSAPDTERRTLTVGMANMVLSLLSSAWFPL
DLSAHQDALLLSGNLLSAVAPKCMRNPWAGEEEGTSGSTNTGGGANKMEEPWAGLSERTL
VAMVEQLFSHLLKVLNICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKDAAEPS
VAPMSPKKGNEVNTGRPADSAGSAAINKSTTLGNFYHLPPYLKLYDVLKATHANYKVTLD
LHSSQEKFGGFLRSTLDVLSQLLEMATLHDISKCVEEILGYLKSCFSREPTMATVCVQQL
LKTLFGTNLASQYEGVLSGPSRSQNKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASL
RNMVQAEQEQDTSGWFDVMQKASNQLRSNIANATRHRGDKNAIHNHIRLFEPLVIKALKQ
YTTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIP
NIFFFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGS
NKADAGKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVIL
PMIAKQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPVTMASVATVQLWVSG
ILAVLRVLVSQSTEDIVLSRVHELSLSPDLLSCHTIRRLHQHSPSPNEPPTDLLGNQETN
GDAQKALPEETFARFLLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFK
SGMFRRITAAASRLLKGESGGGQAGTEAGLFYPLEGLNSMVQCLITTHPSLVLLWCQVLL
IINYTNYSWWAEVHQTPRRQSLSCTKLLSPHSSGEGEEDKPESRLAMVNREIVRRGALIL
FCDYVCQNLHDSEHLTWLIVNHVRDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRC
DNLTTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLA
ETLQNSVAQLPVEELDRIQEYLQISGLAQRHQRFYSLLDRFRATVADTSSPTPPVTSHPL
DGDPPPAPELVIADKEWYVALVKSQCCLRGDVSLLETTELLTKLPPADLFNIMSCKEFNL
SLLCPCLSMGVQRLARGQGSLLLETALQVTLEQLAGVTGSLPAPHQSFLPPSQPQPYWDQ
LAVVYGEPGFYPRVLSLCRALSQYLLSVSQLPSSLHIPSDKEHLITTFTCTATEVVVWRL
LQDHLPLSVDLQWALSCLCLALQQPCVWNKLSTPQYTTHTCSLIYCLRLIIVAVAVSPGD
QLLHPEKKKTKAERDAEGDQVDSARADHMFEWQACEIMAELVEGMQSVLALGHHRNSAFP
AFLTPTLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDV
FREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQ
AITSLVLSAMTLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSK
RDNVHTHHPYHAWDPVPSLSAASAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWL
GNNITPLREEEWGEDEEDEADTPAPTSPPVSPINSRKHRAGVDIHSCSQFLLELYSQWLI
PGSPSNRRTPTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLV
PAICKAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLI
PTVSEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQLCGVMV
SASEDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLML
TCMYTGKEKASPASRPAHSDPQAPDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQ
FLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSN
FTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQ
IDEELDRRAFQSVFETVASPGSPYYQLLGCLQSIHQDTTL
NT seq
9483 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactgatgaaggcctttgagtctctcaagtcattccagcagcag
cagggaccgccgaccgccgaggagctggtccagaggcagaaaaaggaacaggctacaaca
aagaaggacagagtcacccactgcctgacaatatgtgaaaacattgtggctcagtctctg
agaacatctccagagtttcagaaactgctcggcatcgccatggagatgttcctgctctgc
agtgatgacagcgaatcagatgtccggatggtagccgatgagtgcctgaacaaaatcatc
aaagcgctgatggactccaacctgcctagactgcagctggagctgtacaaagaaatcaaa
aagaacggtgcctctcggagtctgagggcagctttgtggaggtttgctgagctcgcccac
ctcatcagaccgcagaaatgcagaccctacctggtcaacctgttgccatgcctcgccaga
atcaccaagcggcaggaggagaccgtgcaggagactctggctgcagcaatgcccaagatc
atggccgccttgggtcacttcgccaatgatggcgagatcaaggtgctgctgaagtcattt
gtggccaaccttaagtcgagctcccccaccatcagacggacagcagcaagctcggccgtc
agcgtgtgccaacactccagacgcaccagctacttctacacctggctccttaacgtgctg
ttaggtctgctggttccagtggatgaggagcaccccagtcacctaattctgggagtgctg
ttaacccttcgctatctgatgcctctgctgcagcagcaagtcaacaccaccagcctcaaa
ggaagctttggagtcatgaggaaagaggctgatgtacagccgacacctgagcaactacta
caggtgtacgagttgaccctacactacacgcagcactgggatcacaatgtggtcacagcg
gctctggagctcttgcagcagatgttcaggactcctccaccggagcttctgcacatgctc
atcacagctggcagcattcaacacgccaccgtgtttcgccaggacgcagagagccgcgca
cgctccggcagcatcctcgagctcatcgcggggggagggtcttcctgcagcccactcctt
ctcaggaaacagagaggtaaaatgctttctggggaggaagatgggttggaggatgacgct
gagagaacagaggtcaccactggttccttcacagcatcagtggttggtgcagatggctcc
tccgtggcccaggtggacatcatcaccgagcagccacgctcctcccagcacaccctgcag
cccggtgactctgtggacctcagcgcctcatcagagcagggcggcggtggtggcgggaca
tctgcatcagacactcccgagtcacccaacgacaacgaggaggaaatgctgagtcggagc
tccagcggcggggccaatattactccagagacggctgactacaccacgcctgagaacgcc
acgccggaaggagggcccttaggagaaggcgggactctgctcagcacgaacgatcgttca
cttccacccagcgactcctcccagaccaccacggagggaccagactcagctgtcacccct
tcagacgtagcagaactggtgctggatggcagcgagagccagtactctgggatgcagatc
ggaacactacaggatgaagaagatgaaggtgcggcgccttccacccaagaagaaccccca
gagcctttcctgcagtcagcgctggctctgagcaagccacatctgttcgaaggtcgaggt
cacaaccggcagggttcagacagcagtgtggaccgcttaataggattcaaggatgaacct
gctgaacccgaacctgacaacaagccgtcacggataaagggtccaattggacattacaca
gacccaggggtggagccgctggtgcactgtgcacggcttcttgctgcttccttcctgctg
acaggacaaaagaacggtctgacccctgacaaagaggtgcgagtcagtgtgaaggctctg
gcggtcagctgtattggggcagcagcagcactgcatcctgaggccttctttaattctctc
tatctggagccgctggacggcattccagtagcagagcagcagtatatcagtgacttgctg
ggtctcattgaacatggggacccccagatcagaggggccacggccatcctctgtggagcc
atcatacaggcagcgctcaccaaaacccgttacaacatacacacctggctggccagtgtg
cagagtgcaacaggtaaccctctgtccctggtggatttggtgcctttgctccagaaaact
ctgaaagacgaatcctccgtcacctgcaagatggcttgctctgcagtgaggcattgcatc
atgaccatatgcagcagcaccctaagtgagctcggcctgcagttggtgatagacttgctt
gctctgagggactgctcctattggcttgttcgtactgagcttttggagaccctggctgag
atggacttccggttagttaattttctggagaggaaaacggagactttgcacaaaggggct
catcactacactgggcgactgcgactgcaggaacgagtcctgaatgatgtggtcatccgt
ctgttgggagatgatgaccccagagtccgacatgtggcagcctctgctgtcagcagactg
gtttccaggttgttctatgactgtgaccagggtcaagcagaccctgtagtggctattgcc
cgggaccagagttcagtctatctgcagctgctcatgcatgagacgcaacccccctcccag
ttcacagtcagcacaatcacaaggacatacagaggcttcaacttgtccaacgctgtgcct
gatgtcacattggagaacaatttgtccagagtggttactgccgtctcacacgctttcacc
tcctctacctccagagccttgacttttggctgctgcgaagccttgtgcctcctggcttta
aattttccagtgtgcacttggagcacaggctggcactgcggctacgttagctccaatagc
agcttttcttcccgctctagcctcaaccgcagcagaggcagggccctcagtgtgtcacag
cccggcaacactccagcctcttcatccacttcatctgcaccagacactgagcggaggact
ctgacggtgggaatggccaacatggtcctctccttactctcctccgcctggtttccactg
gatctctctgcacaccaggatgcacttttgctttctggcaatctgctttctgctgtggct
cctaaatgcatgaggaacccctgggctggagaggaagaaggcaccagcggcagcacaaac
acaggtggaggtgcaaataagatggaggaaccctgggcagggctgtcggagcgaaccctg
gtggccatggtggagcaactcttttcccacctactgaaggtcctcaacatttgtgcccat
gtgctagatgacactccacctggaccagcggttaaggccacccttccgtccctgagcaac
accccctccctcagtcccatccggagaaaaggcaaagagaaggacgcagctgagcccagt
gttgcacctatgagcccaaagaaaggcaatgaggttaacacaggcaggccagcagacagc
gcaggatcagcagccataaacaaatctaccacccttggcaacttctatcacctgccaccc
tacctcaagctctacgatgtcctcaaagctacgcacgcaaactacaaggtgacgttggac
ctccacagtagccaagagaagtttgggggtttcctgcgttccactctagatgttctgtct
cagcttctggagatggccacactacatgacatcagcaagtgtgtggaggaaatcttgggc
tacctcaagtcctgcttctccagagagccaaccatggctacagtttgtgtacaacagcta
ttgaagaccctgttcggcaccaacctggcctcccagtacgagggcgtcctaagtggaccc
agccgttcccagaacaaggctctccgtctcggctcgtccagcctgcggccaggcctgtac
cactactgcttcatggcgccctacactcacttcactcaggctctcgctgatgccagtctc
cgtaacatggtgcaggctgaacaggagcaggacacttctggatggtttgatgtgatgcaa
aaagcttcgaaccagctgaggtccaacattgcaaatgcaacacgccacagaggagataag
aatgccatccacaaccacatccgtctgtttgagccgctggtgatcaaagctttgaagcag
tacaccaccagcacatctgtggccctgcagagacaagtgctggacctgcttgcccagctt
gtgcagctcagagtcaactactgtctgctggactccgatcaggtgttcataggctttgtc
ctcaagcagtttgagtacattgaagtgggacagttcagagattcagaggccatcattccc
aacatctttttcttcctggtgctgctgtcttatgagcgttaccactccaagcagataatc
agcatccccaagatcatccagctgtgcgacggcatcatggcgagcggccggaaagctgtc
acacatgccatcccggccctgcagccaatagtgcacgacctgtttgtgttgaggggctca
aataaagcagatgcaggcaaagagctggatacgcagaaagaagtggtggtctccatgctg
ctcagacttgtgcaataccatcaggtgttggagatgttcatcctcgtactgcagcagtgt
cacaaagagaacgaggacaagtggaagagattgtctagacagattgctgacgtcatactt
cccatgattgccaagcagcagatgcacctggactctcctgaggcactgggagtgttgaac
accctgttcgagactgtggcaccctcgtctctcagacccgtagacatgctgctgaagagc
atgttcactacaccggtcaccatggcatcagtagctacggtccagctgtgggtgtccggt
atcctggcagtactgagggtactcgtttcacagtccactgaggacatcgtcctgtcccga
gtccacgagctctccctctctcctgatctcctctcctgccacacaatccgtcgcctccat
cagcacagcccctccccaaacgagccacccactgatttactcggtaatcaggaaactaat
ggtgatgcacaaaaagccctgcccgaggaaacctttgccaggttcctcctgcagctggta
ggagtgttgctggatgacatttcctccagacaggttaaggtcgatattacagagcagcag
cacaccttctactgccagcagctgggcacactgctcatgtgtctcatacatgtcttcaaa
agtggaatgtttcgcaggatcacagccgcagctagccgtctcctgaagggtgagagcgga
ggcggacaggctggcaccgaggccggcctgttttaccccttagaaggtctgaacagcatg
gtgcagtgcttgatcaccacccacccctccctggtgctgctgtggtgccaggtccttctg
atcatcaactacaccaactactcctggtgggctgaggtgcaccagacacccaggagacag
agcctctcatgcaccaagctgctgagccctcactcctcaggggaaggagaagaggacaag
ccagagagtcggttagccatggttaacagagagatcgtacgcaggggagctctcatcctc
ttctgtgattatgtgtgtcagaacctccatgactcagagcatctgacttggctgattgtc
aaccatgtgcgcgacctcatcaacctttcccatgagcctccagtgcaggatttcatcagc
gcggtgcaccgcaactcagctgccagtggcctcttcatccaggccatccagtctcgctgt
gacaacctcactactcctaccatgttgaagaagactctgcagtgtttggaaggcatccac
ctgagtcagtccggctccctgctgatgctgtatgtggacaagctgctcagtacgcccttc
agggttctggctcgcatggtggacacactggcctgtcgcagagtagagatgctgctggct
gagacactgcagaacagtgtagctcagctacctgtggaggaactggaccggatccaggaa
taccttcaaatcagtggcctggctcagaggcatcagaggttctactccctgctggacagg
ttcagagccaccgttgccgacaccagcagccccacacctcctgtgacgtcacacccgttg
gatggggatccaccacctgcccctgaacttgtcatagcagataaggagtggtacgtggct
cttgtgaagtcccagtgttgtcttcgtggagatgtttccctgttggagacgacagaactc
ctcaccaaactacctcccgctgacctctttaacatcatgagctgcaaggagtttaatcta
agcctgctgtgtccatgcctgagtatgggtgtgcagcggttggcgcggggtcaggggtcg
cttttgttggagacggccttgcaagtgaccctagagcagctcgctggggtcaccgggtca
cttcctgcccctcaccagtccttcctgccaccctcccagccacagccgtactgggaccaa
ttagctgttgtgtatggtgagccaggtttctacccgagggttttgtcactctgtagagct
ctgtcccagtacctgctgagtgtgagccagttgccgtcttcactacatatcccctctgac
aaggaacacctcatcaccacgttcacctgcactgccactgaggtggtagtatggcgtctc
ctccaggaccacttgcccctgagtgtggacctgcagtgggctttatcctgcctctgtctg
gccctgcagcaaccctgtgtctggaacaaactgtccaccccacagtacaccacacacacc
tgctccctcatctactgcctacgcctcataattgttgcagtggctgtgagtcctggtgac
cagcttcttcatccagagaagaaaaagacaaaggcagagagagacgctgaaggagaccaa
gtggactcagcacgtgctgaccatatgttcgagtggcaggcatgtgagatcatggcggag
ctggtagaaggcatgcagagcgtcctcgcgctgggtcaccatagaaacagtgcattcccc
gctttcctcacaccgaccttgcgcaacattgtcatcagtctgtcccgactgcctctggtc
aacagctacacccgagtacctccactggtttggaaactgggctggtcccctcagccagga
ggagagtacggcacgacactgcctgagatccccgtggacttcctgcaggaaaaggatgtc
ttcagagagttcctctaccgcatcaacacactgggctggagcagcaggactcagtttgaa
gagacctgggccactttgctgggggtgctggtcacccaacccatcactatggaccaggag
gaagagacgcagcaggaggaggacttggagcggacccagttgaatgtgttagcagtgcag
gccatcaccagcctggtgctgagtgccatgaccctgcccactgctggcaaccctgcagtc
agctgtctggaacagcagccccgcaacaagagcctcaaagccctggaaacacggtttgga
aggaaactggcagtgatcaggggagaggtggagagagagatccaggctcttgtgtcaaag
agagacaatgtccatacacaccacccgtaccatgcctgggaccctgtcccctcgctgtct
gcagcctctgctggcacactgatcagccacgagaagctgctgcttcagatcaacacagag
agggagatgggcaacatggactacaaattaggacaggtctccatccactctgtgtggcta
ggtaacaacatcaccccactaagagaggaagagtggggtgaagatgaagaggatgaagca
gacacgccagcccccacctccccacctgtatctcccatcaactctaggaagcatcgtgca
ggtgtggacattcattcgtgctcccagttcctcctggagctctacagccagtggctcatc
cctggatccccaagtaacaggaggaccccaaccatactcatcagtgaagtggtccgatcg
ctgctggcagtgtcggacctgttcacagagaggaatcagtttgacatgatgttctccacc
ctgatggaactgcagaagctccacccgccagaggatgagatcctcaatcaatacctggtg
cctgccatctgcaaggctgctgccgtactgggcatggacaaagcaatagcggaacctgtg
tgccgcctgttggagacgaccctgcgcagcacccacctgcccagccgcatgggggctctg
catggagtgctgtatgtgttggagtgtgatctgctggatgacacagccaaacagctcatc
cccactgtctccgagtacctgctgtctaacctccgggctatcgctcactgcgtgaacctg
cataaccagcagcatgtgttggtaatgtgcgctgtggctttctacatgatggagaactac
cctctggatgtaggagcggagtttatggctggaattatacagttatgtggtgtgatggtg
tcagccagcgaggactccactccctccgtcatctatcactgcgtgctgcgaggtctggag
cgcctcctgctgtcggagcagttgtcccgtgtggacggagaagcgctggtcaaactcagc
gtggacagagttaacatgccgtcgccacacagagccatggctgccctgggcctcatgctc
acctgcatgtacaccggcaaggagaaagccagccctgccagtcgccctgcccactctgac
cctcaggccccagacagcgagtccatcattgttgccatggagagggtctctgtgctcttc
gacaggatccgtaaaggtttacccagtgaggctcgggtggtgtccaggattctgccgcag
tttctggacgacttcttcccgccacaggacgtcatgaacaaggtcattggagagttcctg
tccaatcagcaaccgtacccacaattcatggccactgtcgtctacaaggttttccagacg
cttcacgccacaggccagtcttctatggtgcgagactgggtgctgctgtccttatccaac
ttcacccagaggaccccagtggccatggccatgtggagcctctcctgtttctttgtctct
gcttccacctcgcagtggatctcagccctactgccgcatgtaatcagccgaatgggctct
agtgaggtggtggacgtcaacctgttctgcctagtggccatggatttctaccggcaccag
attgatgaggagctggaccgcagggctttccagtccgtctttgagactgtggcctcgcca
ggcagcccttattaccagctgctgggctgtctgcagtcaatccaccaagacacgacactc
tga
DBGET
integrated database retrieval system
