Larimichthys crocea (large yellow croaker): 104921990
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Entry
104921990 CDS
T04659
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
104921990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104921990
03400 DNA repair and recombination proteins [BR:
lco03400
]
104921990
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
104921990
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104921990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104921990
NCBI-ProteinID:
XP_027139091
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All DBs
Position
X:complement(33840208..33847098)
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AA seq
843 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGEPRQARKAEQHPSSQASNGDKKRRNNNKRDGDVGSA
KCAGTQPVCTGAEAKEPVICGRTGYDSGDAGSSGVSAAAAAAAAAGLKAERGLRAKDKVL
DRMQQFKRASPQRMMHKDKSQTTDHERDCAAPPPLLQRHDSFSSGLHLEPQDTDEALALR
LQQELDREAAAVPTVDLEDGGLFFCQICHKDLSHMSPEGRTQHLNRCLDKSEESAPAPSP
PPPPPGVPDCPICGKKFKSQKSRSTHLKRCSTDMGVSPAVLLQALQRQSEETQNVPAANT
TETGGTKRKGPTMPGVQARKKPRKKAEPMDEDTMVALALSTSLLNQERESERWLQTETAA
CDVAGTPVLKWRPEAGKGRGKRKKGAVPRPPPLLLIQDAEVALTRLQERVSALLLRSRPS
SPPTPTRCPSSLPGWKGAAPLWQMSALLHGGSTCLSDFYTPELREFITPWESSTIDAATS
NTVNKPESSVQPTSEGTPVTVAKASILLSSSQTAASSPAPSTPGTGQLPVSSQTLRDLME
LAEDGMTMTQCGYTASDKSACPTVNLHLSGFLLEESEEQADLCVSGFLPETTHTDDSKDR
ARRTTYQPGADKTQGQFVALSRLSSDLSSMVNNPQLSDVQLQVDSGEVYFAHSFMALARC
PLLAEMVHESGFGVQEEGMPAAQRVLISDVPGQAVFALLQYIYTARCSIPGSLWPHVLEL
ASRFDLQELQQLCELHQDAATLGDEEDYTNVNNQIDQAFVELLRSMWNEEDEDNEGTDTD
EGRDEEKGLKEDHRADDLTAVEREIGEEKVNEEELEEIYEFAATQKKREERRTAWTRRKK
RRW
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcagaccaggattttgtagatctctgctcaaagctgctgaaacgagtccgc
aagaaaccaggtgagcccagacaggcgaggaaggcagagcaacatccctccagccaggcg
agcaacggtgacaagaaaaggagaaataacaacaaaagagatggcgatgttgggtctgct
aagtgtgccgggacccagcctgtttgtacaggtgcagaagcgaaagagcctgtcatctgt
ggacggaccggatatgactcaggagatgctgggtcgtcaggtgtgtctgcagctgcagca
gcagcagcagcagcaggactgaaagctgagagaggtttgagggcgaaagacaaagtgctc
gacagaatgcagcagttcaaaagagccagtccacagaggatgatgcacaaggacaaaagc
cagacgacggaccacgagagggactgtgctgctcctccacctctgctgcaaagacacgat
tccttcagctcaggtctccacctggagccccaggacactgatgaggctctggccctgagg
ctgcagcaagagctggacagggaggcagcagcagtcccgacggtggacctggaggacgga
ggcctcttcttctgtcagatctgccacaaagacctgtcgcacatgagccctgaggggcgc
acgcagcacctcaacaggtgtttggataagagtgaagagagtgctccagccccttctcct
cctcctccccctcccggtgtccctgactgtcccatctgtggcaagaagttcaagtcccag
aagagtcgctcaactcacctgaagcgctgctccacagacatgggtgtctctccggctgtg
ctgctgcaggctctgcagagacaaagtgaggagacccagaatgtgcccgctgccaacacc
acagaaactggaggcaccaaaagaaaaggcccgaccatgccaggcgtccaagcgaggaag
aaacctagaaagaaggctgaaccaatggacgaagacaccatggtggccctggctctgtcc
acctctcttctgaatcaggagagggagtcagagaggtggttacaaactgagaccgctgcc
tgtgacgttgccggtactccagtgctgaagtggagaccagaggcaggtaaggggcgtggg
aagcggaaaaaaggcgccgtccctcgacctcctccgctccttctcattcaagatgctgag
gtggctctgacgaggctgcaggagcgtgtctctgctctactcctccgcagccggccttcc
tctcctccaactccaacccgctgccccagcagtctgcctggctggaaaggtgctgccccc
ctctggcagatgagcgcgctactgcatggtggctccacctgtctgtctgatttctacacc
ccggagctcagagagttcatcacgccttgggaatcatcgacgattgatgcggccacctcc
aacaccgtcaacaagcctgaatcttctgtccaacctacgagtgaaggaactcctgttaca
gtagccaaggcctccatcctcctatcctcctctcagactgctgcctcctctccggctccc
tctaccccggggacagggcaactcccagtgagcagccagacactccgagacctgatggag
ctggctgaagatggcatgaccatgacccagtgtggttacacagcttcagacaagagtgcc
tgtccaaccgtaaaccttcatctgagcggcttcctcctggaggagtcagaagagcaggct
gatctctgtgtgagcggcttcctaccagaaaccacacacacagatgacagcaaggaccga
gcgaggaggacgacctatcagccgggagcagataaaactcaaggccaatttgtggcgctg
tccaggctgtcatcagacctgagcagcatggtgaacaaccctcagctcagtgatgtgcag
ctccaggtggacagtggagaggtctactttgctcattccttcatggcgcttgctcgctgt
cccctgctggcagaaatggtacatgaaagtggttttggggtgcaggaggaaggaatgcct
gcagcccagagggtgttgataagcgacgtcccaggacaggcagtgtttgctttgctgcag
tacatctacacagcacgctgctccatcccaggatcattgtggcctcatgtactggagctt
gcatccaggtttgacttgcaggagctacaacagctttgtgagctccaccaggatgcagca
actttgggagatgaggaagactacacaaatgtcaacaatcaaatagatcaggcctttgtg
gagctgctccgctccatgtggaacgaagaggatgaagacaacgagggtacggatacagat
gaaggaagagacgaagagaaaggtttgaaagaagatcatcgagctgatgacctcacagca
gttgaaagagagattggtgaggagaaggtgaacgaagaagagctggaggagatctatgag
tttgctgccacgcagaaaaagagggaggagagaaggacagcgtggacgaggaggaagaag
aggaggtggtag
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