KEGG   Larimichthys crocea (large yellow croaker): 104922079
Entry
104922079         CDS       T04659                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104922079 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lco03041]
    104922079 (snrnp40)
Spliceosome [BR:lco03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104922079 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    104922079 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 104922079
NCBI-ProteinID: XP_019119912
UniProt: A0A6G0HSV7
LinkDB
Position
XIII:complement(39271816..39279183)
AA seq 347 aa
MIEPKKRVADMAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLICTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaagaagagagtggcggacatggcggtggttcctaccgccgtgaagcgg
ccccggacggagctggtggcggcggctcagtctcagcaactcgtggccatgggtccacca
cgcagctccagcctgcaggctcccattatgctgatgtctggtcacgaaggcgaggtctac
tgctgcaagtttcaccccaacggagccacgctggcgtcctcaggatttgacagactcata
ttgatgtggaatgtgtacggagattgtgaaaattatgccactctgaaggggcacagtgga
gcagtgatggagctgcactacaacacagatggcagcatgctgttttcggcgagcacagac
aagactgtaggtgtgtgggacagtgagactggcgagaggatcaagcgtctgaagggccac
acctccttcgtgaacacctgctacccggcccgccgagggccccagctcatctgcactggc
agcgatgacgggacagtcaagctgtgggacatccgtaagaaaggggcgatccacactttc
cagaacacctatcaggtgctggccgtgacattcaatgacaccagtgaccagatcctgtca
ggaggcatcgacaatgacatcaaggtgtgggacctgaggcagaacaagttgatctacaat
atgcacggccacggcgactcagtaactggactcagcctgagctctgagggatcatacctt
ctctcaaactccatggacaacacagtgcgcatttgggatgttcgaccttttgctcccaag
gagagatgtgtgaagattttccagggcaatgttcacaactttgaaaagaatttgctgagg
tgctcctggtcgactgacggcagtaagatagctgcaggctcggctgacagatttgtgtat
atctgggacaccacatcacgcaggatcctctacaagctgccaggccatgctggctctgtc
aacgaagtggcctttcacccagaggagcctatagtgctgtctggctccagtgataaacgg
ctctacatgggagaaattcagtag

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