Larimichthys crocea (large yellow croaker): 104922097
Help
Entry
104922097 CDS
T04659
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104922097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104922097
03036 Chromosome and associated proteins [BR:
lco03036
]
104922097
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104922097
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104922097
PBAF complex
104922097
GBAF(ncBAF) complex
104922097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
104922097
NCBI-ProteinID:
XP_019119843
LinkDB
All DBs
Position
XIII:38462567..38470417
Genome browser
AA seq
953 aa
AA seq
DB search
MATMSGGTNLGIPGISQAGSGTSAHRKKDSSPSARFWESAETLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQAASPALTKLPAQCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNIEMFGAIERALIQNNCMSLPVVYMDPILDQELASRLTD
IVTKHQGTLVEDRTLASHHIYPSPASIEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLPS
NDVEGEVEEPPHSEKPWRVHTGWVLDTDVFNEWMNEEDYCVDERNVPLCLRQHIHLRDDQ
DSKSTPKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVILP
KIVNLKKDSENTPVKGGTMADLDEQEDDFPGREDDEGRGEIPRLSEGEDNITEQTHHIII
PSYTSWFNYNSIHSIEKRALPEFFNGKNKSKSAEIYLAYRNFMIDTYRLNPQEYLSSTSC
RRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQH
KPLQVSASQHMLYFPEKSREKPSDCQNFGLRSDIYTKKHPKTKGASAGREWTEQETLLLL
EALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSE
NPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQEESVDKISELSNQPDKTVSMDPEKME
TNSISHQATLIADGLKVEPSGAKVEGEHVKRENAENILGEERDGRGDDDEREGRREGDGD
EGRVMEQDLVEGSVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLR
HFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQPGYTAQHSALPP
PSGQAIPNRMMPVAANAQTMAPRHPGAPNGMYPSSQPDGIAPAQSVPPAPSHS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaaccttgggattcccgggataagccaagctggcagc
ggaacatccgcacaccggaaaaaagacagcagtccgtccgccaggttctgggagagcgcg
gagactttagctcagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccatcgtgtcaggctctggctgcagtcaccctgcagctgctccag
tttcaagaggatgcctttggcaggcaagctgccagtcctgccctcaccaaactgcctgca
caatgcttcctggacctccggccaggaggtggactctgccacattcttggcactgcctac
aagttcaaagctgagcaaggctggcggcggtttgacttacagaatccatccagaactgag
aggaacatcgagatgttcggtgctattgaacgagcgctgatccagaacaactgtatgtca
ctgcctgtggtatatatggatcccatactggatcaggagctggctagcaggcttactgat
attgtcaccaaacaccagggtacactcgttgaggaccgaacgctcgccagccaccacatt
tacccgtcacctgcttccatagaggaagatgaatggatgcgtcccgtcatgcggaaagac
aaacatgtcttggtacattggggcatgcatcctgacagttacgacagttggctgccttca
aatgatgttgaaggagaggttgaagagccgccgcattcagaaaagccgtggcgggttcac
actggctgggttctggacacagatgttttcaacgaatggatgaacgaggaagactattgt
gtggacgaaaggaatgtaccactctgtctccgccagcatattcatctccgagacgaccag
gactccaaatccacccccaaaaagagaagacgctctccctctcctccatcctctgaaggc
aggaagaaaggaaagaaggggagaaggcgtggacaacaggaggaagagccagaggaagac
ttgaccaaagacatggaggaccctacccctgttcctaacatggaggaggttatactaccc
aagattgtcaacctgaagaaggacagtgagaatactcctgtcaaaggagggaccatggct
gacctagacgaacaggaggacgatttcccaggaagggaagatgacgaggggcgaggggag
atacctcgcctgtcagagggcgaggacaacatcacagaacaaactcatcatatcataata
ccgagctacacatcttggttcaattacaacagcattcactcgatagagaaacgggcattg
cctgaattcttcaatggaaagaacaagtccaaatctgcagaaatctacctggcgtaccgt
aacttcatgatcgacacataccggctcaacccacaggagtatctcagttcgacgtcctgc
aggcgtaacctcaccggagacgtctgtgctgtcatgagggttcatgcatttttggagcaa
tggggtttgattaactaccaggtggatgcagagagcagacccctccccatgggaccccca
cccacccctcatttcaatgtcttagctgacacaccgtccgggctggcccccctacaacac
aaacccctgcaggtgtcggcctcgcaacacatgttgtatttcccagaaaagagcagagag
aagccttcagactgccagaactttggtctgcgctccgacatctacaccaagaagcaccca
aagactaaaggagcgagtgccggaagggaatggacagagcaagagacactcttgctatta
gaggccttagaggtctacagagacgactggaacaaagtatccgagcacgtgggctccaga
acgcaggacgagtgtatcctccacttccttcgtctgccgatagaagacccttatctagaa
gactcctctgcctccctcggcccgctggcgtaccagcctgtgcctttcagccagtcagaa
aatcccgtcatgagcactgtggctttcctggcatctgtggtggacccacgggtggcatca
tcagcagctaaggccgcactggaggagttttcacgagtgcaggaggagtcggtggataag
atctctgaattgtccaaccagcccgacaaaacagtatcgatggatccagaaaaaatggaa
accaactccatctcccatcaggccacgttaatagcggatgggctcaaggttgaacccagt
ggggccaaggtggagggagaacatgtcaaaagagaaaatgctgaaaatatactcggagag
gagagagacggaaggggagacgacgacgagagagaggggcggcgggagggagacggggat
gaggggagagtgatggagcaggatctggtggagggcagcgtcgccacggcggcagcggct
gctctggcctcagctgccacaaaagccaagcacttggcggcagtagaagagaggaagatc
aagtccctggtggctctgcttgtggagacccagatgaagaagttggagatcaagctgagg
cactttgaggagctggagaccatcatggaccgcgagaaagaggctctggagcagcagcgg
cagcagctcctgtcagagcgacagacgtttcacacggagcagctgaaacaggcagagatg
aaggttcgccagcagagggagcagccgggatacacagcgcagcattcagccctgcctcct
ccctcaggccaggccatccccaaccggatgatgcctgtagcagcaaatgcccagacaatg
gcccctcgacaccccggggctcccaatggcatgtacccgtcctcacagcctgatggcata
gcaccagctcagtcggttcctccagcgcctagtcatagctga
DBGET
integrated database retrieval system
