Larimichthys crocea (large yellow croaker): 104922334
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Entry
104922334 CDS
T04659
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03420
Nucleotide excision repair
lco04115
p53 signaling pathway
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104922334 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
104922334 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
104922334 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104922334 (ddb2)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104922334 (ddb2)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104922334 (ddb2)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104922334 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
104922334
NCBI-ProteinID:
XP_019132741
LinkDB
All DBs
Position
XXI:complement(15671290..15675262)
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AA seq
494 aa
AA seq
DB search
MKRKPMQLDATGSKGKGKKRTGEDSAPTLSKKLRDRKDGETSKQGPPLQSAGVQRRSGHG
SILHFIYKSTLGQSLHSQMRQCLQEPFVRSLSSYHYHGATSPFDRRITCLEWHPTHPTTL
AVGSKGGDLYLWDFKAPAKKTFIQGNGAGDFIGGIKFCPKDLSKVYVASGEGTLTVQSFE
GCTPTLLSRTQECGHDHHNVCYWYCCLDVSVSRQMLVTGDNMGQLVLLGLDGQKIFSDKL
HKAKVTHAEFNSRCDWLLATASVDHTVKLWDLRNIKDKKSFLHELPHERAVNSAYFNPTD
CSKLLTTDQYDEIRVYSSSDWSKPQHIIQHPHRQFQHLTPIKATWHPVYDLIVAGRYPDS
RVCPGDQRTIDIFDSNTAELVCQLQDPSVPGIKSVNKFNPMGDVIGSGMGVTVLVWNRSE
SLISNQNKEEETSASVENLRGQRRSQQRSSRDRRGPAAVDAKLKKKLASLEETKTKTKTK
AGCTKQKQAQMKKK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggaaaccgatgcaattagatgcaactggatcaaagggtaaaggaaagaaaagg
accggagaggactctgctccaactctctccaaaaaactacgagacagaaaagatggagag
acatctaaacaaggccctcctcttcagtctgcaggagttcagaggagaagtgggcatgga
agcatcctgcacttcatctacaagagcactctgggtcaaagtcttcactcacagatgaga
cagtgcttgcaggaaccttttgttcgctcactgtcgtcctatcattaccacggtgccacc
agccccttcgaccgcaggatcacatgtctggagtggcatcccacacaccccactactctg
gctgtggggtccaaagggggggacttatatctgtgggactttaaggcacctgcaaagaaa
actttcattcaagggaacggagcaggagattttatcggagggataaagttttgcccaaag
gatctttccaaagtttatgtggcttctggtgagggcacgttgaccgtgcagagttttgag
ggctgcacgcccacccttctgtccagaactcaagagtgtggccacgatcaccacaatgtt
tgttactggtactgctgtctagatgtgtcagtaagcagacagatgcttgtgaccggagac
aatatgggacagctcgtcctcctgggtttagatggccaaaagatttttagtgacaagttg
cacaaagccaaagtgacccatgcagagttcaactcccgttgtgattggttgctggcaacg
gcctcggttgaccacacggtgaaactttgggacctgagaaacatcaaagacaagaagagc
ttcctccatgaactgcctcatgagagagctgtcaactcagcctatttcaatccaacggac
tgctccaagttgctcactacagatcagtacgacgagatccgggtctactcgtcctctgat
tggtcgaagcctcaacacatcatccagcatcctcacaggcagtttcagcatctcacaccc
attaaggccacatggcaccctgtctatgacctgattgtggcgggtcgctaccctgatagc
cgggtttgcccgggagatcagaggaccatcgatatctttgattccaacacagcagagctt
gtgtgtcagctgcaagatccttctgtcccagggatcaaatctgtcaacaaattcaatcca
atgggcgatgtgattggatctggaatgggagtgacagtgcttgtctggaatagaagtgag
tcactgatcagcaaccaaaacaaagaggaggaaacctcagcctcagtggaaaatttaaga
ggccaaaggaggagtcagcagcgctccagcagggacaggagaggtcctgctgctgtggat
gcaaagcttaagaagaaactggcttctctggaagaaacaaagaccaagaccaagaccaaa
gctggatgtactaaacaaaaacaagcacagatgaagaagaagtaa
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