Larimichthys crocea (large yellow croaker): 104922367
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Entry
104922367 CDS
T04659
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04217
Necroptosis
lco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
104922367
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104922367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104922367
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
104922367
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
104922367
Multi subunit type E3
LUBAC complex
104922367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
IBR_1
ubiquitin
Motif
Other DBs
NCBI-GeneID:
104922367
NCBI-ProteinID:
XP_010733474
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All DBs
Position
XXIII:12736784..12748126
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AA seq
710 aa
AA seq
DB search
MSLSSGGWTHTPGYTPDQSAALPSHYAASQSQLGCQTVLMSVRVSVCHSGIRPLCLPGAG
DESLRLQLSMDPGKSGEFRLSLQDSSGTGRSVTIAEFDLGTVNYEVKSPKCHELSLAAPP
HDRISFNFRCEQEAQEWATVVLSSLREAHRVAPQVNGPQRPLDSVDAHNTSALQQTEETC
IELTRAIEAGDMQSASAFAATLARQHATLKIQPSARDYEDTEISLAVVVEDSSSSCCVTV
KVYPHMTTAALKQQMFLEYGFHPRVQRWVIGQCLCADQRTLASYGVHQDGDTAFLYLLSA
RHARLTQQVLQHDQESALLLSSPSLSLPTATPPATSANGPSSLDRRPYTTLPPKLYTSSS
TGGSERGTITEIKDLINLEMPQLNEALSTNTASTQGWSCPSCTYINKPTRPGCEICSTNR
PENYVIPGGYRPDALELRRIQQEKEAIRQYQQAREEERRENFARLVMMDSQDLLPNPEPV
DCRICYVDLQPGEGVLLRECLHCFCRECLRSVIMLSEEPEVSCPYRDDTYSCTCSLQERE
IKALVPAEEYERWLQRGLSVAESRCEGSYHCATPDCLGWCVYEDTVNVFHCPVCRKHNCL
ICKSIHEGMNCKQYQDDLAARAINDSAARRTTQLLKTLVQSGEAMHCPQCGIIVQKRDGC
DWLRCTVCHTEICWVTRGPRWGPRGPGDTSGGCRCNVNGQKCHPKCQNCH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagttcaggcggttggactcacacccctggctacacaccggaccagtcggcc
gccctccccagtcactatgcggcctcgcagtcacaactcggctgccagaccgtcctcatg
tcggtccgagtgtccgtttgtcattcgggtattcggccgctgtgtcttccgggagcaggt
gatgagtcactccgcctgcagctcagcatggacccggggaaatccggggaattccggctg
tcgctccaggacagcagcgggactggccggagtgtgaccatcgccgagtttgatctgggc
accgtaaactatgaagtgaagtcaccaaagtgccacgagctgagtttagcggcgcctcca
catgaccgcatcagtttcaacttccgctgtgagcaggaagcccaggagtgggctacggtg
gtgctatcttcactgagagaggcccacagagtcgcccctcaagttaacggtccacagcgc
cccctggacagtgttgatgctcacaacacctcggccttgcaacaaacagaagaaacctgc
atcgagctgacccgagccatagaagcaggtgacatgcagtctgcttctgcctttgctgcc
acacttgcccgacaacacgcaacgctcaagattcagccctctgccagagactacgaagac
actgaaatcagcttggctgttgtagttgaggattcttcttcatcctgttgcgtcactgtg
aaagtttacccacacatgactactgcagcactgaaacagcagatgtttctagagtatggc
tttcacccacgggtgcagcgctgggtgattgggcagtgtctgtgcgccgaccagcgcact
ctggcctcgtatggggttcatcaggacggtgacacagccttcttgtacctcctgtcagcc
cgtcatgcacgcttaacccaacaagtcctccagcatgaccaggaaagtgccctccttctc
agttctccatctctgtccctccctactgctaccccccctgctacctctgcaaatggcccc
tcttctctagaccggaggccttacaccaccctacctccaaaactctataccagcagcagt
actggtgggtcagagaggggaaccatcactgagatcaaagatctcatcaacctagagatg
ccccaacttaatgaagcactgagcaccaacacagcctccacccagggttggtcgtgccct
tcttgcacttacataaacaaaccaacacggccaggctgtgagatttgcagtacaaaccgc
ccggagaactacgtcatcccgggtggttaccgacctgacgcactggaactccgacgaatc
caacaggagaaggaggctatcagacagtaccagcaggcaagggaagaggagcgcagggag
aactttgcccggttggtgatgatggacagtcaggacctgctgcctaacccagaacctgtg
gactgtaggatctgctatgtggacctgcaacctggagagggggtcctgctgagggagtgt
ctccactgcttctgcagagagtgcttacgttcagtcatcatgctgagtgaggagccggag
gtgtcctgtccctacagagatgacacatattcctgtacctgctccctgcaggagagggag
atcaaagctttggtaccagcagaggagtatgagcgctggctgcaaagaggtttgtcagtg
gcagagtctcgatgtgagggcagctaccactgtgctactccagactgtctgggctggtgc
gtgtatgaggacacagtcaatgtcttccactgccccgtctgcaggaaacataactgcctg
atttgcaagtctatccatgagggaatgaactgtaaacaataccaggatgatcttgcggcg
cgtgctataaatgactctgctgccaggaggacgacgcaactgctcaagactcttgtgcag
tcaggcgaagcaatgcactgtccccagtgtggcatcattgtgcagaagagggatggatgt
gattggctgcgctgcacagtttgccatactgagatttgctgggtaaccaggggtcctcgc
tgggggcctaggggtcctggagacaccagtggaggatgccgctgcaatgtcaacggtcag
aaatgtcatcctaaatgccaaaactgccactga
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