Larimichthys crocea (large yellow croaker): 104922453
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Entry
104922453 CDS
T04659
Symbol
pcdh7
Name
(RefSeq) protocadherin-7 isoform X2
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104922453 (pcdh7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104922453 (pcdh7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104922453 (pcdh7)
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104922453 (pcdh7)
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104922453 (pcdh7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
LYRIC
Gp80
Adeno_E3_CR2
DUF1180
Motif
Other DBs
NCBI-GeneID:
104922453
NCBI-ProteinID:
XP_010733584
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Position
XIV:complement(5171983..5274876)
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AA seq
1247 aa
AA seq
DB search
MRTTGAVDYLYYCMLILQFVHQPAAKQVLRYRLAEEGPADVRVGNVAADLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGENSRRSGSSGDSYSGKRRFDEGASRSSVFELQVADTTDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPILQLKAT
DADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGIANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEMEGEQNKKKYFLHTSAPLDYEATQEYNVVIVAVDSGSP
SLASNNSLIVKVGDTNDNPPVFSKNVVEVSFPENNAPGERVTTVAAIDADSGKNAEIAYS
LDSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIAKDKGINTLQGSATVVVLVADKN
DNEPKFMQDVFTFYVKENLEPNSPVGMVTVIDADKGQNAEMSLFIEEEEDIFSIENDTGT
IFSTLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNPPTVTFPINSSYTLL
PPSSNIRTVVRTVIATDTDTGINADLNYSIIGGNPFKLFEIDGGTGVISLVGKLEQKHYG
LHRLVVQVNDSGQPSQSTTTLVHVYVNETLSNSTVVEAQVAKSLSTSLNTNIAGDPNYDL
SKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKSKK
PKKDKKKQKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDLA
RHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSDYSSQTIN
KYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPEDS
YERTTPDGSVDARPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPSKSTTTPQQPK
LSTFMSGNGSGSSSAEHPGSQETLAMAAMANGDPTAAHMMGDRNRNLLNKKMASSSSSYE
AFGSPSYGSPGSGEETLGHPTEEIPLAPTGEYKPTSCGTLTRREVYL
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggtgcagtggactatttgtactattgcatgctcatcctgcagtttgtg
catcagcccgctgccaagcaagtgctccggtaccgtttggctgaggagggacccgccgat
gtcagagtagggaacgtagccgccgacctgggcatcgttgccgggtccggtgaggtgaca
ttcacgcttgaatcaggctctgattttttcaaaatagacaacataacaggtgagctcacc
accaatgagaggcgcatagaccgggaaaaattacagcagtgccaaatgatatttgatgaa
aatgagtgttttatagattttgaagtgtcagtgataggaccagcccagagctgggtagat
ctctttgaggggaaagtcatcatactagatataaatgataacaccccatcattcccttcc
cctgtcctgacactgtctgtggaggaaaacagacccattggaaccctttatctgctgccc
acagccacagacagagattttggcagaaatggaatagagagatacgagctgatccaggac
aatggggagaactcaaggcgctctggctcttctggggattcatactcagggaagaggaga
tttgatgaaggcgcgagcaggagcagcgtctttgaactgcaagttgctgacactactgat
ggagagaagcagccccaactcatcattaaaggggcccttgatagggaacagagagactcc
tatgagctcacactgcgcgttagggatggaggagatcccccgcgctcctcccaggccatt
cttagggtgatgattaccgacgtgaatgacaacagtccacggtttgagaagagcgtttat
gaagccgacttaccagaaaacagctcccctggcgcccccatactgcagctcaaagcgact
gatgcagacgtgggggttaacggtcaaatagagtatgtgtttggggcagccacagagtct
gtaaggaggctattgaggttggatgagagcacagggtggctgagtgtgttgcaccgcatc
gaccgtgaagaagtgagccagctgaggttcacagtaatggcccgtgaccgaggccagcca
ccgaaaatggacaaggccaccgtggtgctgaacatcaaggatgagaacgacaacgttcct
gctattgagatacggaaaataggacgcattttcttaaaagatgggatagccaacgtggct
gaggacgttgtggtggacacacccattgccttggttcaggtgtcagaccgagaccagggg
gaaaatggcatcgtgacctgcacagtggtaggagatgtgccttttcagctcaaaccagcc
agtgagatggagggtgagcagaataaaaagaaatatttcctccacacatctgcaccgctg
gactacgaggccacacaggaatacaatgtggtcatagtggctgtggactctggaagccca
agtctggcaagtaataactctcttatcgtcaaagttggcgacactaacgacaaccctcca
gtcttcagcaagaacgtcgtagaggtgtcgtttccggaaaacaatgcccctggcgagagg
gtgacaacagtggcagccatcgacgcagatagtgggaagaatgctgaaatagcctattcc
ctagactcgtcagtaaatgggattttctctatcgatgcagacagtggagacatcagagta
aacaccattctggatagagagcaaacggagcgctacgaattcaaagtgatagccaaagat
aagggcataaacacccttcagggctctgcaacagtggttgtccttgtggccgataagaat
gacaacgaaccaaagttcatgcaggatgtattcaccttttatgtcaaagagaaccttgag
ccaaacagcccagttggcatggttacagtcattgacgcagataaaggccaaaatgcagaa
atgagtcttttcattgaagaagaggaggacattttttcaattgagaacgacactgggact
attttctccaccttgtcttttgaccgagaacagaaaactacttacacgtttcgtgtcaaa
gctgtggacgggggtgatcctcccagatccgccaccgccacggtttctctcttcgtcatg
gatgaaaatgacaacccaccaactgtcactttcccaataaacagctcctacacccttctt
cctccctccagtaacatcagaacagtcgtcagaaccgtcatagccactgacactgacacc
ggcatcaacgcggacctgaactacagcatcattgggggaaaccccttcaagctgtttgaa
attgatggaggcactggtgtcatttctctagtggggaagttggagcagaagcactatggc
cttcaccgattagtggtccaggtgaatgacagcggccagccttcacaaagcaccaccaca
ctagttcatgtgtacgttaatgagaccctttccaattccacagttgtggaggcccaggtg
gctaaaagcctgagcacgtctctcaacaccaacattgccggtgaccccaactatgatcta
agcaaacagcggttaagcattgtgattggggtagtttcaggcatcatgacggtcatcctc
attattctagttgttgtcatggcccgttactgccgtcccaagaataagaatggctatgag
gccggcaagaaggatcacgaagacttcttcacaccacagcagcacgacaagtccaagaag
cccaagaaggataagaagaaacagaagtcaaaacagccactctacagcagcatcgtcact
gtagaggcctccaaacccaatgggcagcgctacgatggcgtcaacgagaagctgtcggac
agtcctggcatgggtcgctaccgttcagtcaacggagggccggggagcccagatctggcc
cgacactacaagtccagttcaccactccctactgtccagcttcatccacagtcgccaacg
gctggtaaaaagcaccaggcagttcaggacctgccccctgccaatacctttgttggcacc
ggagataacatttcgcttggatctgaccactgctctgattacagcagtcaaactatcaac
aagtacaacaaacagccgtttcgccgagtgaccttctcggtggtgagccagccccaggac
cctcaccagcagggatcgctgcagagctgctacgacagcggcctggacgagtcggagacg
cccagcagcaagagttcgtcgggcccccggctgggcgcccttccccttcccgaggacagc
tacgagaggacaacgccggatggcagtgtcgacgcccggcctttgcctgacgtagccatg
actggcaagtgcacccgggaatgcgacgagtacggccactcggactcctgctggatgcct
gtgcgcacgtcgcctgagcgacggccatccaagtcaaccaccaccccacaacaaccaaag
ctttcaactttcatgagcggcaacggcagcggcagcagcagcgcagagcatcccggcagc
caagagaccctcgccatggccgccatggccaacggagacccaactgccgctcacatgatg
ggcgaccgcaatcgcaacctgctcaacaaaaagatggcttcctcctcctcctcctacgag
gccttcggctcgccttcctacggctcgccaggaagtggggaggagacgctgggccacccc
accgaggagatccctctggcacctactggggagtacaagcccacgtcctgtggtactctg
acgcgacgggaggtgtacctgtga
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integrated database retrieval system
