Larimichthys crocea (large yellow croaker): 104922466
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Entry
104922466 CDS
T04659
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04145
Phagosome
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104922466
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104922466
09144 Cellular community - eukaryotes
04510 Focal adhesion
104922466
09142 Cell motility
04820 Cytoskeleton in muscle cells
104922466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104922466
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104922466
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104922466
Membrane trafficking [BR:
lco04131
]
Endocytosis
Phagocytosis
Opsonins
104922466
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104922466
Exosomal proteins of colorectal cancer cells
104922466
Exosomal proteins of bladder cancer cells
104922466
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104922466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
DUF7630
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
104922466
NCBI-ProteinID:
XP_010733596
UniProt:
A0A6G0I1R0
LinkDB
All DBs
Position
IX:complement(4784658..4799377)
Genome browser
AA seq
940 aa
AA seq
DB search
MGVWTALILASQLLLKLCLHVEAQALVYDLLTSPDCLPDLLQGGLAEQGVNEAFILTTFK
LQPKSGTSVFTLYNPRDNSKYFEFTVMGKLNRAVLRYLRSDKRMSSVTFNNLVLADGQQH
RLLFHLKGMQQQGPGGVELHLDCRLVETVRDLPAAFQGLPAGYGTVELKTMQAREQESLD
ELKLVVGDSFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVINELKDVLIQQVK
ETSFLRNTISECQACGLGGTEIVKQRCGPGVCFRTDMCIETADGVECGPCPDGYTGDGFN
CDDVDECQFNPCFPGVKCVNTAPGYRCDTCPLGYTGMAVEGVGVLFAQTNKQVCDDIDEC
KGPNNGGCTANSMCHNSMGSYHCGSCKTGFTGDQVKGCKPELSCGNSLTNPCDINAQCIL
ERDGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDINCRKDNCVYVPNSGQEDADR
DGQGDTCDDDADGDGIPNEQDNCWLKPNVDQRNSDKDSHGDACDNCRMVENPDQRDTDGD
GKGDACDDDMDGDGLKNFLDNCQRVQNRDQLDRDGDGVGDACDSCPDIPNPNQSDVDNDL
VGDSCDTNQDSDGDGHQDTKDNCPLVINSSQLDTDKDGVGDECDDDDDNDGIPDTMPPGP
DNCRLVPNPDQMDDNNDGVGDICESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGR
LGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSTQHGVDSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtggacagccctgattctggcctcgcagctgctattaaaactgtgcttacac
gtggaagcccaggctttggtctatgatctgctcacctcgcctgattgcttgccagacctg
ctacaggggggtctggctgagcaaggggtgaacgaggctttcatcctaaccaccttcaag
ttgcagcccaagagcggaacctctgtgtttaccttgtacaaccccagggacaacagcaag
tactttgagttcaccgtgatggggaagcttaatcgagctgtgttgcgctacctgcggagt
gacaagaggatgagctcagtaaccttcaacaacctggtgctggcagacggccaacaacac
cgactgttgttccacctgaaggggatgcagcagcaagggccaggcggggtggagctgcat
ctggactgcaggcttgtggagacggtcagggatctccctgctgccttccagggtttgcca
gcaggttatggtactgtggagctaaagaccatgcaagctagagagcaggagagtttagat
gagctcaagctggtggttggggactcatttgagaatgttgcttcattacaagactgtcat
ttccaacaaagagactccgtccaaactctgggggtcaacacgaagcagctgtccaatcaa
atgttggagttaacaaaggtgataaatgagctgaaagatgtcctaattcagcaggtcaaa
gagacctcatttctcagaaacaccatctcagagtgtcaggcctgcggtctgggtggtact
gagatagtgaaacaaaggtgtggccctggagtctgtttccgaaccgatatgtgcatagag
acagcagatggtgtcgagtgtggaccgtgtcctgatggctacaccggtgatggtttcaac
tgtgatgacgtggatgaatgccagtttaacccatgcttccctggagtgaagtgtgtgaac
acggccccgggttatcgctgcgacacctgtccgctaggctacaccggcatggccgtagag
ggtgtgggcgttttgttcgcacagaccaacaaacaggtgtgtgacgacatcgatgaatgc
aaaggacctaacaacggaggctgcactgcaaactcaatgtgtcacaactctatgggctct
taccactgcggcagctgtaagacaggtttcacaggagatcaggtgaagggctgcaagcca
gagctcagctgcggcaacagtctgaccaacccctgtgacatcaacgcccagtgcatttta
gagcgggatgggtccattacttgtcagtgtggaatcggctgggccggtaatggatacctg
tgtgggaaggatactgacattgatggatacccagatgagaaacttaaatgcaaagatata
aactgtagaaaggataactgcgtctatgttcctaactctggtcaagaggatgctgacagg
gatggacaaggagacacctgtgatgatgatgcagatggtgatggtataccaaacgagcag
gacaactgctggttaaagcccaacgtggaccagaggaacagcgataaggacagccacgga
gacgcatgtgataactgtcgcatggtggagaaccctgaccagagggacactgacggtgac
ggcaaaggggacgcatgtgatgacgacatggacggagatggcctgaagaattttctggac
aactgtcagcgtgtccaaaacagagaccagttggaccgggatggagacggcgtgggagac
gcctgcgacagctgccccgatatccccaacccaaaccagtctgatgttgacaatgacctg
gttggagactcctgtgacacaaaccaagatagtgatggcgacggtcaccaggatacaaag
gataactgcccactcgtgatcaatagctcccagttggacacagacaaagacggggtgggt
gatgagtgcgacgatgacgacgacaatgatgggatccctgacactatgcctccgggaccg
gacaactgccgactggtaccaaaccctgaccagatggacgacaacaatgatggagttgga
gacatatgtgagtctgactttgaccaggataaagtgattgacaggatcgacaactgccct
gaaaatgctgaggttaccttgactgacttcagggcctatcagacggtggtgctggaccct
gagggtgacgcccagattgaccctaactgggttgttttgaaccagggaatggaaattgtt
caaaccatgaacagtgacccaggactcgctgttggttacactgctttcagtggagtggac
tttgagggcacgtttcacgtaaatacagtgactgatgacgactacgctggcttcattttc
ggctaccaggactcatcctccttctacgtggtgatgtggaagcagactgagcagacttac
tggcaggcaacacccttcagagctgtggccgagcctggcatccagcttaaggctgtgaag
tctcgatcaggccccggggagcacttgagaaattcactgtggcacacgggagacaccaac
gaccaggttcgtctgctgtggaaagacccaagaaatgtaggctggaaggacaaggtgtcc
taccgttggtacctgcagcaccgcccacaggttggatacatcagggcacgattttatgag
ggaactgagctggttgcagactcgggcgtgactattgacaccacgatgagaggagggcga
cttggtgtcttctgtttctctcaagaaaatatcatctggtccaatttgaaataccgttgc
aatgacaccatcccagaggatttccaggagttcagcactcagcacggcgttgactcactc
taa
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