Larimichthys crocea (large yellow croaker): 104923199
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Entry
104923199 CDS
T04659
Name
(RefSeq) protocadherin-20 isoform X1
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104923199
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104923199
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104923199
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104923199
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104923199
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
104923199
NCBI-ProteinID:
XP_010734531
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Position
I:complement(37864004..37868785)
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AA seq
890 aa
AA seq
DB search
MNYAFSFAGLGCCLCPQRSLVAQELVPCVRAMGHGTPDNMNWAGLLQNLLVAVHLRQILC
DSVWFSIPEEQEPGILAGSLSKHFPPPYQLLTQEYLWMDKNTGNFYTTEQKMDRETLCPE
ETGAEECIILHNAIVGPSGDLIQFPVIIEDINDNAPHFENSEIHLKVSEDVTVGTSFLLD
DQAQDRDAGHNGKLHYHLEDSDGVFRIKVEKDGPVIMLVVQTALDRETRDLYHMALVATD
RGSDPLSATATLIVTVTDVNDNCPSFSSDSARNVTIPGDSRKNMLVAQVKATDPDSGPNA
AIVYSLSPKVSKRAKKLFSLDSLTGYIRLTQDLQSDNSEDLLLKVLASGHHCPPADTQVT
VSVLPKANQELTIKIGFIAEHQNQTMVLPENQPPTVLAVLELEGDSSFKDTSLAIENEVP
FTLSPQNGKYLLSTSKPLDYETKSEHHISVVAHARSAEGTVIAPSRRVMRVMVSDVNDNA
PHFLQPHYQLEVEENNQPGKPLLQVLALDADSGSSGRVTYRLDKHTSTVFNIDPVTGQLS
VSASLDREQQDVHKLTVFARDSGSPPLESVATVSIRVLDQNDNAPVFLTPHFLFFIPESV
PPFAQVGGLGVTDPDEGKNGNTELHLVNSSGPFVVDNTQGTLRTTTNLDRETQDRYELYL
LASDHGHPVSLTSTARVTIFVEDINDNQPKVILPSSNSSCLTVSPETTEGTMVTKIYAVD
EDSGLNSEITYTVVAPEPVQNSSPFRVDSRSGNITVAQQLLQQDLRMHHLFIVVRDGGKP
APLYTTVWVNLWVNESMEPCHLDRAPTWTGTPDLFQTPSKAPICEVEDTRSAQLILLVGL
GMMLASICLLVVTAVLYLKQRRVSPQQNKRVDNAENEIPLRLMDKYYSDD
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgccttcagcttcgcaggtttaggttgctgcctctgtcctcagcgctcactt
gttgcccaggaacttgtaccatgcgtgagggcgatgggccatgggactcctgataatatg
aactgggctggactactgcagaatctgctggttgcggtccatctccgacagatcttatgt
gactctgtctggttttctatcccagaggaacaagagcctggtattctggctgggtcactt
agtaaacactttccacctccataccagctcctgacccaggagtatttgtggatggacaaa
aacacgggcaatttctacaccactgaacaaaagatggatcgtgagaccctctgccccgag
gagacaggagctgaagaatgcattattctacacaatgctatcgtggggccctcaggagac
cttatacagtttcctgtgatcatagaagacatcaatgacaatgcacctcattttgaaaac
agtgaaatacacctgaaagtgtctgaggacgtaactgttgggactagtttcttactggat
gaccaggctcaggacagggatgctggacataacggcaagctgcattaccacctggaagat
tctgatggtgttttcagaataaaagttgagaaagacgggcctgtcatcatgctggttgtg
caaacagctctggatagggagactcgggacctgtatcacatggcgctggtggccaccgac
cgcggctcagaccctttaagtgctacagcaacgttaatagtcacagtgacagatgttaat
gacaactgtccaagctttagctctgacagcgcccgcaatgtcaccatccccggagactct
aggaagaacatgctggttgctcaggtcaaagccacagacccagattcaggcccgaatgct
gccatcgtttactccctcagtcccaaagtctctaagcgcgccaagaagctttttagcctt
gacagtctcactgggtacatcagactaacacaggacctccagagtgacaactcagaggac
ctactgttaaaagtgttagctagcggccatcactgccccccagcagacactcaggtaacc
gtatctgtgctccccaaggcgaaccaagagctgacgatcaagatcgggttcatagcagag
catcaaaaccaaacgatggtgttaccagagaaccagccccctaccgtcttagccgtttta
gagcttgagggtgacagcagctttaaagacacatctcttgccattgagaacgaagtgcct
ttcactttgagtccacagaatggcaaatatctgctttccacatcaaagcccctagactat
gagacgaaaagtgaacatcatatttcagtggtagcgcatgcgagatcagcagaaggcact
gtgatcgctccttccaggcgtgtgatgagagttatggtgtcagatgtcaatgataatgcg
ccacatttcctccagcctcactatcagctggaggtggaggaaaacaaccagccaggaaag
cctctgctgcaggtcttggctttagatgcagacagtggatccagtggcagagttacctac
aggctggacaaacacacatctaccgtctttaacattgaccctgtgacaggtcaactgtct
gtatcagcctctctggatagggaacagcaggatgtacacaaactcactgtgtttgcaaga
gatagcggctctcctcccttggagtcagtggccactgtatctattcgtgttctggaccag
aatgacaatgcacctgttttcctaacacctcactttctcttttttattcctgagagtgta
ccaccatttgcccaggtggggggactaggggtgacagacccagatgaagggaagaatggg
aacacagagttgcatcttgtaaacagcagcggaccctttgttgtggataacactcagggg
acactgcgaaccactaccaacttggaccgcgagacacaggaccgctatgaactctacctg
ctggccagcgatcatgggcacccagtttctttgacttccactgccagggtaaccatcttt
gtggaggacatcaatgacaaccagccgaaagtgatccttccaagcagcaactcctcatgc
ctgacggtctctccagaaaccactgaaggcaccatggtaacaaagatctatgccgtagac
gaggactctgggctgaattcggagattacatacactgttgtggcaccagagccagtgcaa
aatagcagccccttccgggtggattcaagatcagggaatatcaccgtagctcagcaactt
ctacagcaggacctacgaatgcatcacctgttcattgtggtcagagatggggggaaacct
gctccactttataccactgtctgggttaatctgtgggtcaatgagagcatggagccctgc
cacttggacagggcacccacctggacagggacacctgacttgtttcaaaccccctcaaag
gcccccatctgtgaggtggaggacaccagatctgctcagctgatactgttagtaggcctt
ggcatgatgctggcatccatatgcttgctcgtggtgacagctgttttgtacctgaaacag
aggagagtaagtccacaacagaacaagagggttgacaatgctgaaaatgagattccactc
aggctcatggacaaatattattctgatgactaa
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