Larimichthys crocea (large yellow croaker): 104923221
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Entry
104923221 CDS
T04659
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104923221 (rnf40)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104923221 (rnf40)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
104923221 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
Rab11-FIP3
zf-RING_UBOX
zf-RING_2
zf-RING_5
OVT1
SpoIIE
Motif
Other DBs
NCBI-GeneID:
104923221
NCBI-ProteinID:
XP_027145081
LinkDB
All DBs
Position
XVI:9624699..9637614
Genome browser
AA seq
1012 aa
AA seq
DB search
MSGAGGGKRPSGGDSPPGPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMDMKVLQFKNKK
LCERLEQRQAMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEECVHVLRKRIEPEAPV
TSTPAPPSAPLPDPTPMEEDGVNLASPASVVPPPPLPDAQNEGEQSEQPQQEDRQEEREE
EQQPQQQQPPPPTASEELLSPTEPPQESSADASPPPPPLSENAKGFLATLEHSSEEELSL
HLQDRMQFSKEAIACLVCVFDRLHSCIDDMCKQVQAAACEDDSQSEIVNVNHTLLEENSR
LRDLATLLQGRHHKMSMEYNELVDKVTSSETKVSEMETTVEDLQWDIEKLRNREQKLNKH
LAEAMEQLKSGYSSTGSSGGLPGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQVE
LQEAVRESEKLKMDLRNIPEEVVKETLEYKCLQSQFSVLYNESLGVKTQLDEARALLLTA
KNAHLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPI
NREMRHLISSLQNHNLQLKGDVQRYKRKLRETQMEINKLRCQSGDTGVLILEETTSDSID
VKKEEDEDQEEEEERRKELERQRAREREREREAERERERERERERQRSDELKRKDSDTLK
MLRVELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVCSLVDELRMRVRE
LEERERKESKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQ
EQNSRLLQQLREKDDANFKLMSERIKSNQIYKLLKEEKEELADQVLTFKTQVDAQLLVVQ
KLEEKEGVLQSTLAALEKELSVRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIQV
SVAENRTARERESSNLKRAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCP
CCNTRDKETVLTKCFHVFCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgctgggggaggaaaacgtccctcgggaggggacagcccccctggcccacct
gagaagaaaagcaaaaaagaggagaagaccaccaccaccctgattgaacccatacgcata
gctggagtctcctccacggaggaaatggacatgaaggtcctccagttcaagaataagaag
ctgtgcgaacgcctggagcagaggcaggcgatggaggacgagttacgggagaagatcgag
aagctggagaagagacaagccactgatgacaccactctgctgattgtcaaccgctactgg
tcacagttggaagagtgtgttcacgttctacgcaagcgaattgagccagaagctccggtg
acgtccacccctgccccaccctcagcccctctccctgaccccacgccgatggaggaagac
ggggtcaatctggcatcaccggcgtccgtcgtgcctccacctccgctcccggatgcccag
aatgaaggggagcagtcagagcagccgcagcaagaggaccgtcaggaagaacgtgaggag
gagcagcagccgcagcagcagcagcctcctcctcctactgcgtcagaagagttgttgtcg
cctacagagcccccacaggagtcatcagcagacgcatcgccaccgcctcctcccctaagt
gagaatgccaagggtttcctagccacgttggagcacagcagcgaggaggaactaagcctt
cacctccaagaccgcatgcagttcagcaaggaggccatcgcctgcttggtctgtgtcttt
gacaggctgcacagctgcatcgatgacatgtgcaagcaggtccaggctgcagcatgtgaa
gacgatagccagtctgaaatcgtcaatgtgaaccacactctgttggaggagaacagtcga
ctgcgagacttggccactcttctgcagggccgacatcacaagatgtccatggagtacaat
gagttagtggacaaggtgaccagctctgagaccaaggtgtctgagatggagacgacagtg
gaggacctgcagtgggatattgagaaactccgcaatagggaacaaaagctcaacaaacat
ctggcagaggccatggagcagctaaagtctggttacagcagcaccggcagctcaggtggg
ctgcctggaggtcaaattacactgaacattcagaagtttgagagtctcaatgcagagttg
gagcacaaccaggagttggccaatagccgcatggcagagttggagaaactgcaggtggag
ctccaggaggctgtgagggagagtgagaagctcaagatggacttacggaatatcccagaa
gaggttgtgaaggaaactctagagtataagtgtctgcagtcccaattctccgtgctgtac
aatgagtctctcggggtaaaaacccagctggatgaggcacgagccctcctgctcactgcc
aagaacgcccacctccgacagattgaacacatggagagcgacgagctgtcccttcagaag
aagctgcggactgaggtcatccagctggaggataccctggcccaggtgcgcaaagagtac
gagatgctgcgcatcgagtttgagcagaacctggcagccaacgagcaagcaggaccaatc
aacagggagatgcgtcacttaatcagcagccttcagaaccacaacttgcagttgaaaggt
gacgttcagcggtataagaggaagctgcgggaaacacagatggagatcaataagttgcgt
tgtcagagtggcgatacgggggttctgattctggaggagacgacgagtgacagcatcgac
gtgaaaaaagaggaggatgaggaccaggaggaggaggaggagaggagaaaggaactggag
agacagcgggcccgggagagggagagggagagggaggccgagagagaacgagagagggag
cgcgagagagagaggcagcgtagcgacgagctgaagaggaaggactcggacacactgaag
atgctccgagtagagctcaaaaaagctcaggagtcccagaaagagatgaagctcttgttg
gacatgtataagtctgctccaaaagagcagagagacaaagtgcagctcatggcagctgaa
cgcaaatctaaagctgaggtttgttctttggttgatgagctgagaatgcgagtgcgagag
ctggaggagagggagaggaaggagagcaagaagctggcagacgaagatgcactgaggaag
atccgcgtggcagaagagaccattgagcatctgcagaagaaactggctgccactaagcag
gaggaggaagccctgctgagtgagatggatgtaaccggccaagcctttgaggacatgcag
gaacagaacagccgtctgctgcagcagctacgagagaaggacgacgccaatttcaagctg
atgagtgagcgaatcaaatccaaccaaatctacaagctgctgaaagaggagaaggaggag
ttggccgaccaagttctcacattcaaaacacaggtggatgcccagctgttagttgtgcaa
aagctagaagaaaaagaaggtgtcctgcagagcacgcttgcagctctggaaaaagaactg
tctgtccgaacgcaagcactagagctcaacaagaggaaggcggtggaggctgcccagctg
gcagaggacctgaaggtgcagctggagcacacgcaggccaagcttaaggagatccaggtc
tccgtggctgagaaccgcactgcccgggagagggagagcagcaacctgaaacgagcacag
gaggatctgtccaggcttagacgcaagctggagaaacagaagaaggtggaggtttactcc
gacgctgatgagatcctgcaggaggagattaaccagtacaaggccaagctgcgctgtccg
tgctgcaacacaagagacaaggagacggtgctcaccaagtgtttccacgtgttctgctac
gaatgtctgaagatgcgttacgacacccgacagaggaagtgccccaagtgcaactgtgcc
ttcggagccaacgactttcatcgcatctacatcacctaa
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