Larimichthys crocea (large yellow croaker): 104923308
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Entry
104923308 CDS
T04659
Name
(RefSeq) FRAS1-related extracellular matrix protein 2
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104923308
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lco04091
]
104923308
Lectins [BR:
lco04091
]
C-Type lectins
Lecticans
104923308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
TMEM154
DUF6522
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
104923308
NCBI-ProteinID:
XP_019114944
LinkDB
All DBs
Position
VII:complement(22818143..22882034)
Genome browser
AA seq
3116 aa
AA seq
DB search
MACWIIPPHLHGTGSALVLLAVILTGDAVAQAFDSYGLSYALRSELSEDTILVANNGIRV
PFGRSVFIDPINDLVIQVQPGDRCSITVLDNDPLSQRPGHLSPKKFPCEFGPNDVKYSHF
GSRSPPRDRVRLQLRYDTQTDTIIIPFMMEVEVIFTQLEVLTKNMPLTVEKLLGTSNPID
RRILEFTYDKSAQQCRIASLSSGSVLPRYGKLVDEHSLGTMVDCDDFIKMNIRYQHTFAL
KSPNRDYIPMFVELHDKEGNLLKQEYFQILVRIKDGEENTAPKPSFVAMMMMEIDQFVMT
AITMDMLAAEDVESNPDELIFNITSTLSFEEGYIVSTDDRNLPITSFYQGDLKDLKIAYK
PPAVDSDTERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSRP
LSSSQNLEISDEDSLDKVKITVIDGLRHGELTVLGSRRKFFTPADLDTGVVIYQHDGSDT
YSDNIIFRMTDGRNEVEFLFPITVVPTDDEPPIINANTGLVLFKNQMMPISSLMLSAADI
DSEDSSIKFTIEPPLSTIGQVLLRQSEAPEDPSTWKFNTEDELYEKVVTEWLQQDIIDGK
LFYKHTGPHSTGTVMDQFVFRVQDDNDPPNQSGESSFIIKIIPVDDIAPELYPGTTLQIT
VHEYQLTYFRKKFLRYTDLDSEDRDLKYTIIQPPTDTDENSPVVLGALVLTEQPNTEVTT
FTQAQINHHKIAYKPPDLELGITTHVLQFKYTVEDVSGNTVDGVFAIFLKPVDNMPPQIT
NSGFTVLERGTHVITTAELDTTDTDTDSKQISFTITQPPLHGQIQFAFTDMTKGDTFRLD
DIRNDRISYIHNGDESTVDLIQIDVSDGIHVVPITIKISVKPVDDETPTISLPAGTIGSY
IDVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPSLGEILVKGVRSGTFTQADIINGH
VVYAHTSGEIGLTTREDFFNLTLTDMSDEWTVGGNKITGVRVHVTILPLDSQAPEVFVGP
QYSVVEGEKNVIQILHISTHDADTPSDDLLCTIIVQPTSGYVENVSPAPGSEKSRSGTAI
SAFTIKDIRQNHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPISIIPSNDEKPEI
YMREFIVMEGMNIVIDTPILNGADADLPSDQLTFVITKPPKHGFILNQLTTGTVPVSNFT
LDQIREASSIVYEHDDSETTEDSFDIVLTDGKFSIEKTVIVMIIPVDDETPRMAINDGLE
IEIGQVKIINSNVLKATDLDSEDSTLTYIIRYGPAQGYLQKRTPSGTLQNITVGMNFTQN
EVDQGLIFYTHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVINKGVSLKE
GGRVTLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECTDTPGMPISSFTQLQLAGNKVY
YIHTADDEVKMDSFEFEVTDGYNPVFRTFRISISDVDNKKPVVTIHSLVVIEGENKLITP
FELTVEDRDTVDRLLKFTITQIPVHGRLLFNNTQSVTSFTKQDLNENMISYKHDGTESAG
DSFSFTVTDGTHTDFYIFPDTVFETRKPQVMKITVLPVDNGVPQIVVNKGAPTLRVLETG
HLGFVITSKTLKAEDRDSIQDSVTFRITVGPEHGYLINLGKGNATITTFTQAEIDDMNIC
YVLRDGDNATNDIFSFSIEDSGGNKLKNQQFRLNWAWISLEKENYVVDEDVKFLEVVLKR
RGYLGETSFVSIGTKDGTAEKDKDFRGKSQKQVQFNPGQTTAIWKVRILSDSEYEVSETF
QIVLSEPVMAALEFPEFATVEILDPDDESTVFIPSATYNIEEDIGELLIPVHRSGDVSQE
LMVICYTQQVSATGTIPTTVLSYSDYISRPEDHHSILRFDKGEMEKTCRVVIIDDSLYEE
EESFNVTLSMPMGGRLGSEFPTARITIIADMEDAPIFYFGNTDYHVDESDGFVEVQVWRT
GTDLSKGGTVTVRSRKTDPVSAEAGVDYVGISRNLDFAPGVTMQTFRVTILDDLGQPALE
GPEKFELVLRMPMNGILGEPSKATILINDSVSDLPKVQFHDAVYVGSENSGQISAIVYRS
GDISYKSTVRCYSRQGTAQVMMDFNERPNTDASIITFLPGEIEKPCVLVLVDDTEHEEEE
ELRLVLGSPKSDSPFGASIGGQNETLIKIKDDADKAIIRFGETKFSVNEPKESGQVSVVK
IPVLRNGDTSKVSVVRVHTKDGSATSGEDYHPISEEIVFKKGDTEHYVEVEILYDSVREM
REAFTVHLKPDENMVAETKMNKAIIYIEEMNSMADVTFPSVPKVVSLLHYDDIDRNRDSL
PVAGYPVICVTACNPKYPDYDKTGSICVSENINNTLTRYRWLVSAPTGPDGVTSPMREVD
FDTFFTSSKLITLDSVYFQAGSRVQCAARGVNVNGDEGLELSSPVVSVSMDEGMCQPRVA
GAVGAEPFSAKLRYTGTEDTDHPNLIKLTVTMPHIDGMLPVVSTRPLSNFELTLSPDGTR
VGNHRCSNLLDYAEVKTRYSFLTEATKNPEVIGETAPYQYSTSLRGSSTLRFYRNLNLEA
CLWEFTSYYDMSELLSDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQHF
DLQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINGQGRLVVNFRTEARFRGL
FVFAHPASPLTSMVMCPDHPGLTFNLSLVRSEPTYNQPIQQWTFVSDFAVRDYSGTYTVK
LVPCTSPPSLEYTIPPVCNPREPLTFDMDIRFQQVSDPVAAEFSLNTQMILLSKRMLWLS
DGSMGFGQESDTAFSQGDTIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPSN
FEFGCLADAPSLLYRFKIIDKAQPETQARAFGNVAFNAFLAVDDPGALPLVRQPGSDGFR
IDSSALFQVSTGREWYIHTIYTVRSRDNANRGIGKRSLEYHVMSQHTDLLPKGQHRARRT
ANDVPDIIEDIGVSKNRGTNILHIALDRSSQRKTSPEREIFTKGIIPRELNQKDNSDDRL
VLIIGIFVGLLLTVLIAIMVVLLVRSKKEKKETPKSSSSAEPMMTQVFSSSDSSEV
NT seq
9351 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggattattcccccgcatctgcacgggactggatctgctttggttctgctt
gccgtgattctgacaggtgatgcggtcgcgcaggcttttgacagctatggattatcatac
gccctgaggtctgagctgtcagaggacacgatattggttgccaataatgggatccgcgtg
cctttcgggagatcagtcttcattgatcccatcaacgatttggttatccaagttcagccc
ggtgatagatgcagcataacagtcctggacaatgaccccttgtctcaaaggcctggacac
ctatctccgaaaaagtttccgtgtgaatttggccccaacgacgtgaagtattctcacttt
ggatcaaggagtcctccgagggatagagtgagattacaactcaggtatgacacccaaacg
gataccattataataccttttatgatggaggtggaagtcattttcacacagctggaagtg
ctgaccaaaaatatgccactcactgtcgagaaactgcttggcacaagtaatcccatagat
aggaggattttagaattcacctatgataaaagtgcacaacaatgcagaatagcctctctc
tccagtggcagcgtgctgcccaggtatggcaaacttgtggatgaacacagccttggaaca
atggtggactgtgatgacttcattaaaatgaatatacgttatcagcatacttttgcttta
aagtcaccaaatagagattacattccaatgtttgtggagttacacgacaaagaaggcaat
ttgctcaagcaggaatatttccaaattttggtgaggattaaagacggagaggagaacacg
gctcccaaacccagcttcgttgcaatgatgatgatggaaatagatcagtttgtaatgaca
gcaataaccatggatatgctagctgcagaggatgtcgagtctaatcctgacgaattaatt
ttcaacatcacttccaccctctcctttgaggagggctacatagtgagcacagatgatagg
aatttaccaataacctcattttaccaaggagacctcaaagacttgaaaatcgcctacaaa
ccccctgctgtggattcagacactgagcggattttccagattgagtttgaggttgtggac
acagagggagctgtgtcagacccttttgctttcatgattgttgttaagcctatgaacaca
ttggctcctgtggtgactaggaatactggccagttactttatgaagggcagtccaggcct
ctgtccagttcccagaatctggaaatcagtgatgaggacagtttagacaaagtcaaaatc
acagttattgatgggctcaggcatggagaattgactgttctgggctccaggaggaaattt
ttcaccccggctgacctcgacacaggagttgtcatttatcaacatgatggcagtgacaca
tacagtgataatattattttcagaatgacagatggcagaaatgaggtggagtttctgttt
cccatcactgttgtgccaaccgatgatgagcctccgataattaacgccaacactggtttg
gttttgttcaaaaatcaaatgatgccaatctcctcacttatgctcagtgcagcagacatc
gactcagaagattcttcaataaaattcaccatagagcctcccctttccacgattgggcag
gtgttgctgcgtcagtctgaggccccagaggacccatcaacctggaagtttaatacagag
gatgaattgtatgagaaagtagtgactgaatggctgcagcaggatattattgatggtaag
ctgttttacaagcacactgggcctcacagcaccggcacagtcatggatcagtttgtgttt
agagttcaagatgacaatgacccaccaaaccaatcaggtgagagctcattcattatcaaa
attatccctgttgacgacatagcacccgaactgtaccctggcacaactctccaaataact
gtgcacgagtatcagcttacttacttccgaaagaaattcctccgttacactgacctggac
tcagaggatcgggatctcaaatacacaatcatccagccacccacagatacagatgagaat
agccctgttgtactgggagctctggtgttaactgagcagccaaacactgaagtcaccact
ttcactcaggcgcaaattaaccaccataaaatagcttacaaaccgcctgatcttgagctc
ggaatcaccactcatgttttgcagtttaagtacactgtggaggatgtttctggaaatact
gtagatggtgttttcgctatatttttaaaacctgtggataacatgccacctcagataacc
aactctggatttacagtgcttgaacggggcacgcatgtcattacaactgctgagctggac
accacagacacagacacagacagcaaacagatatccttcactatcactcagcctccactg
catggtcagatccagtttgcattcactgacatgacaaaaggagacactttcaggctagat
gacatcagaaatgacagaatttcatacatccataatggagatgagtccacggtagatttg
atacaaatagatgtcagtgatgggatccatgttgtcccaattactataaagattagtgtg
aagccagttgatgatgaaactccaactatcagtctcccagctggtacaattggctcctac
atagatgtactggaaaatggtgcaacagaaataacaagtaatgtaattcagggaagagat
gaggacacagatgaccttcgtttgacctttattgtagaggatccaccatcattaggagaa
attctggtgaaaggtgtccgatctggtacattcacccaagctgatatcattaatggccat
gtggtctatgctcataccagtggggagatagggttaaccacaagggaggactttttcaat
ctcactttgacggacatgtctgatgagtggactgttggagggaataagatcacaggtgtc
agagtgcatgtaactattcttcccctagacagccaggctccagaggtctttgtggggcca
cagtactctgttgttgagggagagaaaaatgtcattcagattcttcatataagcactcat
gatgccgacacccccagcgatgacctgctttgtacaatcattgtacagcccacttcaggg
tatgtggaaaatgtctccccagccccaggctcagagaaatccaggtctgggacagctatt
agtgctttcaccatcaaggacatcagacaaaatcacatctactatgttcaaagcattcac
aaaggagtcgagccagtggaggacaggtttacattcagatgctcagatggcatcaatttc
tctgaaaggcactttttccctatctccataatcccttctaatgatgaaaagcctgagatt
tacatgagagagtttatagttatggagggcatgaatatagtcatcgacactcctattctg
aatggtgctgatgcagatctcccctctgatcagctcacgttcgttatcaccaaacccccc
aagcacggatttattctcaatcagctcactaccggcactgtccccgtctctaacttcacc
ttggatcagatcagggaggcctccagcattgtgtatgagcatgatgactcagagaccaca
gaggacagctttgatattgttctcacagatggaaaattcagtatagagaaaacagtaata
gttatgattatccctgtggacgatgagaccccgaggatggcgatcaatgacggccttgaa
attgagattggtcaggtgaaaataataaacagcaacgttttaaaagctactgatctggac
tctgaggacagcacactaacttacattattcgctatgggcctgctcaaggatatttacag
aagagaacgccttcagggacattgcaaaatatcacagttggaatgaactttacacagaat
gaagtggatcagggtttgattttctacacccataacgggcaagaggggatccgtgacctt
atcaaatttgatgtgacagatggcatcaaccctttgattgacagatacttctatgtcaca
gtgggtggcattgacatggttttcccagatgttattaataaaggtgtatcccttaaagag
ggcggcagggttactctgacaacagacctcctcagtaccagtgacctcaacagcccagac
gaacacttggttttcacaatcaccagagctccgatgagaggacacctggagtgcacagac
acacccgggatgcccatctcatccttcacacagctccagttggctggcaacaaagtctac
tacatccacacagccgatgatgaagtgaaaatggatagctttgaatttgaagtgactgat
ggctacaaccccgtgttccgcactttccgcatttccatcagtgacgtggacaataaaaaa
cctgtggtgacaatacacagccttgtagtgatcgagggagagaacaaactcatcacgcct
ttcgagctaacagtggaggacagagacactgttgaccgcctcttgaaattcacaatcact
cagattccagttcatggtcgcctgctctttaacaacacccagtctgtcacctccttcaca
aagcaagacctgaatgagaacatgatcagctacaagcatgatggcacagagagtgcgggg
gacagcttctccttcactgtcactgatggcactcacacagacttctatatcttccctgac
acagtatttgagactcgaaagcctcaagtgatgaagattactgtcctcccagtggataat
ggtgtcccacagattgtggtgaacaagggtgccccgacattgcgggttcttgagactggc
cacttgggttttgtaatcacaagtaagactcttaaagcagaagacagagatagcattcag
gattctgtgacttttaggattaccgttggcccagaacacggctacctgatcaacctcggc
aaaggaaatgccactatcaccacttttacacaagctgaaattgatgacatgaacatatgc
tacgttctgagggatggtgacaatgctacaaatgacatcttctctttctccatcgaggac
agtggaggcaacaaactgaagaaccagcagttccgtctgaattgggcttggatctcgtta
gaaaaggaaaactacgtggtggatgaagacgtcaagttcctggaggtggtgctgaaacgt
cggggctacctgggggagacctccttcgttagtatcggcacaaaggatggcactgcagaa
aaggacaaagatttccggggaaaatctcagaaacaggtgcagttcaacccgggccagacc
acagccatctggaaggtccggatcctgtcagatagcgagtatgaagtgtcagagactttc
cagatcgttctgtctgagccggtgatggcagcccttgaattcccagagtttgctactgtg
gagattctggatcctgatgatgagtcaacagtgttcataccctcagctacatacaacata
gaggaggacattggcgagctgcttattccagtgcacaggagtggagatgtcagtcaggag
ctaatggtcatctgctacacccagcaagtttcagccacgggcaccatccccaccacagtg
ctgtcctactctgattacatctccaggcctgaggaccatcacagcatcctgcgcttcgac
aagggagagatggagaaaacttgccgggttgtgatcatcgatgactcactgtatgaagag
gaggaaagcttcaatgtcaccctaagcatgcccatggggggccgtctgggctcagagttc
cccacagccagaatcacaatcattgctgatatggaagacgctcccatcttctactttggc
aacacagactaccacgtggatgagagtgatggctttgtggaggtgcaggtgtggaggaca
gggactgatctttccaaaggaggaaccgtcacagtgcgctccaggaagacagatcctgtc
tcagctgaggctggtgtggattatgtggggatcagccggaatctggactttgcaccaggg
gtcaccatgcagacatttcgtgtgaccatcctggatgacctgggccagccggcgctggag
gggccagagaagtttgaactggtactgcggatgcccatgaatgggatccttggggaaccg
agcaaggctaccatcctcatcaatgactctgtttcagacttgccaaaggtgcagttccat
gacgctgtgtatgtggggagtgagaactcagggcagatctcagccattgtataccgcagt
ggtgatatcagctacaagtccacagtacgctgctacagcaggcagggaacggcccaggtt
atgatggacttcaatgagaggcccaacacagatgcatccatcatcaccttcttaccagga
gaaattgaaaagccttgtgtcctggtactagttgatgacacagaacatgaagaagaggaa
gagctccgtcttgtgttgggaagccccaagagtgactctccatttggagcatctattgga
gggcagaatgaaacactcatcaagataaaagatgatgcagacaaggcgattattaggttt
ggagagactaaattcagtgtgaatgagccgaaggaaagtggccaagtgtctgtggtgaag
atcccagtgctgcgcaatggagacacctctaaagtctccgttgtccgagttcacaccaag
gatggatctgccacatctggggaggactaccatccaatatctgaggaaattgttttcaag
aagggtgacacagagcactatgtggaggtggagattttatatgatagtgtcagagaaatg
agggaggcgttcacggttcacctgaagcctgatgagaacatggtggcagaaacaaagatg
aacaaagccataatctatatcgaggagatgaacagcatggcagatgtcaccttcccctca
gtgcccaaagtggtttctctgttgcattacgatgacatcgacagaaacagggactctctc
cccgtggctggataccctgtcatttgtgtcactgcctgtaaccctaagtacccagactat
gacaaaacaggatccatctgtgtgagcgagaacatcaacaacaccctaactcgttatcgt
tggctagttagtgcccccaccggtcccgatggtgtcaccagccctatgagggaagttgac
tttgataccttcttcacctcttccaagctcatcactctggactcagtctactttcaggct
ggttccagggttcagtgtgctgcaaggggtgtgaacgttaatggggatgaaggcctggag
ctcagtagccccgtagtgtccgtcagcatggacgagggaatgtgccagcctcgtgttgca
ggtgcagtgggggctgagcctttctctgccaagctgcggtacactggaacagaagacaca
gaccaccccaacctcatcaaactaaccgtcaccatgcctcacattgacggtatgttgcct
gtagtgtccacccggcccctctctaactttgagctcacactgagccctgacggtacccgt
gttggtaaccatcgctgctctaatttgctggactatgctgaggtcaagactcgctacagc
ttccttactgaagccaccaaaaatccagaagtgattggggagacggccccttaccagtac
agtacttccctcaggggatccagtacactacgattctatagaaacctcaacttggaagcg
tgtttgtgggaattcaccagctactatgacatgtctgagcttctcagtgactgtggaggc
accattgggactgatggacaggtgctgaatctggtccagtcctatgtgacccttcgagtc
ccactccatgtgtcctatgtcttccactcccctgtgggagcaggaggatggcagcacttt
gatttacagtcagagctgaggctcacatttgtgtacgacactgccatcttatggagagac
ggtattggtagcccaccagaggctgaactacaaggtgccctctacccgacgagtatgcgt
ataaatggtcagggacgactagtagtcaacttccgcactgaggcacgattcagaggcctg
tttgtttttgcacatccagcttcaccccttacctccatggtcatgtgtcccgaccaccct
ggtttgacctttaaccttagtcttgtgaggagtgagccaacctacaatcagcccatccag
cagtggacttttgtttctgattttgctgtgcgtgactactctggcacatacacggtgaag
ttggtcccgtgtacatcccctcccagtctggagtacaccatccctcctgtctgcaatccc
agagagcctcttacctttgacatggatatccgctttcagcaggtgagcgaccccgtggct
gctgagttcagtctgaacacgcagatgatcttactctctaaacggatgctctggctctcg
gatggctccatgggctttggacaggagagtgacactgctttctcgcagggggatacaatt
tatggtcgagtgatggtggatccagtgcagaacttgggcgactcattcatttgtaacata
gagaaagtcttcctgtgtaccggagctgatggatatgtccccaaatacaaccccagcaac
tttgagtttggctgtctggctgacgccccatcactactctacagattcaagatcattgac
aaggcccagccagagacccaggcccgggcgtttggcaatgtagctttcaatgctttcctg
gctgtggatgaccctggagctttacctctagtgaggcaacctgggtcagatggtttcaga
atagattcctcagctctctttcaggtctctacagggagagagtggtacattcacaccatc
tacactgtccgttctcgggacaacgctaaccgtggcataggtaagagaagcctcgagtac
catgtgatgagccaacacacagatctgcttccgaagggtcaacatcgcgctagaagaacg
gcgaatgatgtgccagacataatagaggatatcggcgtaagcaaaaaccgtggcaccaac
atcctccacatcgcactggatcgcagcagccagcggaagacgagcccagagagagagatc
ttcaccaaagggatcatcccccgtgagctcaaccagaaagacaacagtgatgacagactg
gtgttgatcattggtatctttgttggactgctcctcacagtacttatcgccatcatggtg
gtattactggtccggtccaagaaagagaagaaagagacacccaagagctccagcagtgca
gagcccatgatgacacaagtctttagtagcagtgacagctcagaggtctaa
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integrated database retrieval system
