Larimichthys crocea (large yellow croaker): 104923413
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Entry
104923413 CDS
T04659
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04020
Calcium signaling pathway
lco04080
Neuroactive ligand-receptor interaction
lco04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
104923413
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
104923413
04082 Neuroactive ligand signaling
104923413
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lco04040
]
104923413
Ion channels [BR:
lco04040
]
Ligand-gated channels
Glutamate (ionotropic)
104923413
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
104923413
NCBI-ProteinID:
XP_010734785
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All DBs
Position
XVI:19838129..19897257
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AA seq
1397 aa
AA seq
DB search
MAIPRGHPPPSPWPPLLLFLLLLLISSPLPLQARPLLLHPSINVAVVFSGSSYQNEVRGR
LSGENFVDLPVVVSPVTVLVNDTNPRDLLTHLCDTMATERLHGVVFEDDVGSGAGAQVAE
VAQILDFLSTQTALPIVGISGGSAVVIPYKAEGSSFLQMGASLEQQVVCMFKLMEEYDWG
EFAVITSLLPGYDTFVDIVQSYKETSYFLWNIQDVLSLEMSVGANDARTKRMLQQVDSQV
LLVYCSHEEAQYLFRQATEVGLLGPGYIWILPSLAVGNPESPPPDSFPVGVIGVITDQWR
KSLRQRVREGVAIIAKGAESFKKQYGFIPDGHGDCNKPAKQSDNNTLFRHMLNVTWERKD
LSFNNQGFLSNPSMVIVALDRERLWDKVGTYARGILQVRYPVWPRYGSFLEQVSDDRHLT
VATLEERPFVIVENVDPGTGTCVRNTVPCRRQSNRTESIIGHSESYTKLCCKGFCIDILK
KLSRTIKFSYDLYLVTNGKHGKLVRGTWNGMIGEVVYRRADMAIGSLTINEERSEIIDFS
VPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYN
RSLVSAKSPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASY
TANLAAFMIQEQYIDTVSGLSDKKFQKPHEHYPPFRFGTVPNGSTERNIRSNYPDMHTHM
MKYNQKGVEEALESLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAL
QKDSRWKRHIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLL
VAMGLSLLVFAWEHLLYWKLRHSLRKSHKLDFLLAISRAIYSCFNGVEDPGRSSGLAKPD
LTSNYAQANMLKMLRTAKDLVSTANVETSLDNATKTIEQLSRHGGSLPIRVPQVATETVP
GGFAYITENHCPLPQRSITPPLTAVTSLKHHRGVTRPTPLRYTLPTHSSSCLYDRPLPVS
SLSSPHLAVGEPLPHQHPHHYQTTGRLYVDTHPHSPFIPYADLQLPDIYASHPITSPQSQ
HIPAGFSRRKRRSKSFQCEDGDVERRKHRDKEKSDKGPVCLSELKANHLQENHISAPSVD
SLYAGEVMCPRVENYSSWPPEDLMLRGRRRHRRPSFLKATWGSEQMRQLEESQSSLSSQS
PSTLPDLFPCILTPTTPAKACNPAHLRNNLCLPRNQTYLHIREDQRRPNGRKGQRLRYSH
SAHLPTYGEAVRHGTGLGRGVVRRATSLLSRQYTHYLNSYPGLPLYHGPLDLQHHSQASS
SHPSPSPVCQLLACGGGRCGSQRALLYQDSVYGAYGVYQGSQTGSEAQAGQGVGGPPVGS
PCVLRPWRRVSSLESEV
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggccattcccaggggacatcctcctccctctccatggcctcctctcctcctcttcctc
ctcctcctcctcatctcgtccccgctccccctgcaggcccgtccactcctcctccacccg
tccatcaacgtggcggtggtgttcagcggctctagctaccagaatgaggtcagaggtcgt
ctcagtggggaaaactttgtcgacctgcccgtggtggtcagccctgtgaccgtgctggtt
aacgacaccaacccacgcgaccttctgacacacctctgcgataccatggcaacagagaga
ctgcatggcgtggtgttcgaggatgatgtgggctcgggtgccggggcgcaggtggcagag
gtggcacagatcctggacttcctctccactcagacagctctgccgattgtgggcatcagt
ggcggctctgcagttgtcataccatacaaggccgagggatcctccttcttgcagatggga
gcgtctctggagcagcaggttgtctgcatgttcaagctcatggaggagtacgactggggc
gagtttgcggtgatcaccagcttgctgccgggttacgacacctttgtggatatagttcag
tcctacaaggagacctcctatttcctgtggaatatacaggatgttttgtctctggaaatg
tctgttggggccaatgacgcgaggactaaacgcatgctgcagcaggtggactctcaggtc
ctgctggtgtactgctcccatgaggaggcgcagtacttatttcgtcaggcaaccgaggtg
ggtctgctggggccaggctacatctggatcctccccagtctggccgtgggcaaccccgaa
agtcctccgcctgacagcttccctgtcggtgttattggagtgattacagaccagtggagg
aagagcttgcggcagagggtgagagagggtgtcgccatcatagcgaaaggtgccgagagc
ttcaagaagcagtacggttttattcctgatggacatggtgactgcaacaaaccggctaaa
cagtcagacaacaatactctgttcaggcacatgctgaatgtgacgtgggaaaggaaagat
ctttcattcaacaaccaaggtttcctctccaacccttccatggtcatcgttgctctggat
cgggaaagactctgggacaaggtgggaacatatgctcgagggatccttcaggtccgctac
ccggtctggcctcgatatggcagcttcctggagcaagtgtctgatgaccgtcacctgacc
gtagccacgctggaggagcgtccctttgtcatagttgagaacgtggacccgggcactggc
acgtgtgttcgcaacacggtgccctgcaggcgccagtccaaccgcacagaaagtattatc
ggccactctgagtcctacaccaaactgtgctgtaagggcttctgcatagacatcctgaag
aaactgtcccgcaccatcaagttctcatacgacctctacttggtcaccaacggaaaacac
ggcaagctggtccgtgggacttggaacggcatgattggggaggttgtgtacagacgagct
gacatggccatcggctctctcaccatcaacgaggagcgttcggaaatcatcgacttctcc
gtgccgtttgttgagacgggcatcagcgtcatggtcgcccgcagcaacgggacagtttcc
ccatccgccttcctcgagccctacagtccagcagtttgggtcatgatgtttgtcatgtgc
ctgaccgtggtggcggtgacggtttttgtgttcgaatacttcagtccagtcggctacaac
cgcagcctggtcagcgccaaatctcccggtggtccgacgttcaccatcgggaagtcagtg
tggctgttgtggggcatcgtcttcaacaactcggtccccattgaaaaccctaaaggaaca
accagtaagatcatggtgctggtgtgggccttctttgctgtcatcttcctggcttcatac
actgccaacctggctgccttcatgatccaggaacagtatatcgacacagtgtctgggctc
tctgacaagaagttccagaaaccacatgagcattaccctccttttcgcttcgggaccgtc
ccaaatgggagcacggagaggaacatccgaagcaactaccccgacatgcacacgcacatg
atgaaatacaaccagaagggggtggaagaagctctagaaagcctcaaaaccgggaagctg
gacgccttcatctatgacgctgctgttttgaactacatggccgggaaggatgagggctgc
aagctggtgaccatcggcagtgggaaagtgtttgccaccacgggatacggcatcgctctg
cagaaggactcccgctggaaacggcatattgacctggcgctgctgcagttcctcggagac
ggagacacccagcgcttggagacggtgtggttgtcgggcatctgccagaacgagaagaat
gaagtgatgagcagcaagctggacatcgacaacatggcgggcgtcttctacatgctgcta
gtggccatgggcctcagtctgctggtctttgcctgggaacacctgctttactggaaacta
cgacactccctccgcaagtctcacaaacttgacttcctgttggccatcagcagggctatt
tacagttgtttcaatggagtggaggatcctggccgttcatctggtttggccaaacctgac
ctgacgtccaactacgctcaagcaaacatgctaaagatgcttcgcactgccaaagacctt
gtttccactgccaatgttgagacctctctggacaacgccaccaaaaccattgagcagttg
agtcgtcatggcggcagcttgcccattcgggttccacaagtcgccacagagaccgtaccg
ggaggattcgcttatattacggagaatcattgcccacttccccagcgctccataactcca
cctttgactgccgttacctctctgaaacaccacaggggtgtgacaaggcccacgccactg
cgttacactcttcccactcactcttcgtcatgtctgtatgaccggccacttcctgtgtcc
agcctcagtagcccacacctcgctgtgggtgagcccctccctcatcagcacccacaccac
taccagacaactgggagactctacgtagacacccatcctcattcgcccttcatcccctac
gctgatcttcaactacctgacatctacgcctctcacccgatcacttcgcctcaaagccag
cacatcccagcaggcttttctcgacggaaacggaggtccaagagtttccagtgtgaggac
ggggatgtagagaggagaaaacacagggataaggaaaagagcgacaaaggtcctgtctgt
ctgagtgagctcaaggccaaccacctccaagagaaccacatctccgcccccagcgttgac
agcctctacgcaggggaggtgatgtgtcctcgggtagagaactacagttcctggccccca
gaggacctcatgttgagagggagacgcaggcaccgccgcccctctttcctcaaagcgaca
tggggcagcgagcagatgcgccagcttgaagaatcccagtcatccctctccagccaatca
ccctccaccctgccagacctgttcccatgcattcttacaccgaccacacccgcaaaagcc
tgcaaccctgcccaccttcgaaacaacctgtgcctcccacggaaccagacctacctccac
ataagggaggaccaaaggaggcccaatgggcgtaagggccagaggctgcgctactcccac
tccgctcacctccccacgtacggagaagcagtgcgacatggaactgggttagggcggggg
gtggtgcggagagccacgagcttgctcagcagacagtacacccactacctgaactcgtac
cctggactaccgctctaccatggccccctagacctgcagcaccacagccaggcctccagc
agccacccaagccccagcccagtgtgccagctgctggcttgcggtggcgggagatgtgga
agccagcgggctttgctataccaggacagtgtgtatggggcctacggggtgtatcaggga
tcccagactggttcagaggcccaagcaggacagggagttgggggtccacctgtagggagc
ccctgtgtacttcgtccctggcgacgggtgtcgagtttggagtctgaggtgtga
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