Larimichthys crocea (large yellow croaker): 104923481
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Entry
104923481 CDS
T04659
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104923481 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104923481 (msh2)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104923481 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
104923481
NCBI-ProteinID:
XP_010734927
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Position
XVI:15074100..15083065
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AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTAHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKVEFKA
SPGNLTQFEEILFGGATGAEGCAGVVAVRHATGADGQRVVGVGYVDAAQRKMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGEGNADGNKLREVVQRGGVLVSDRKRAEFSSKDVVQDL
NRLLRAKKGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPDDTTGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRQSATLQDCYRVYQAVSHIPALITAL
ERYSGSYQVLLEAVFLSALRDLQTDFTKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQAVLNSAARELGLDAGKTVKLESNSMLGFYLRVTCKEEKTLRNNKRFTT
LDVQKNGVRFTNSKLSALNEDYTKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDVVVSFAVASVSAPVPYVRPQLLADGCRRMELQQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLFA
THFHELTALAVQHASVRNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPAVV
AMAKEKAEELEEFQEPAGEKSEQEEEPEAKRRRTDKQVGENLIQDFLEKVKSLPAATMSD
EEVKSALRKMKQELVGKNNTYIAEILARCAPAKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacagaacctgtccatggacagtgcagccgagcacggctttcta
aacttcatcttctccatgccggagaagccggacacgactttcaggatattcgaccgcaac
gactactacacggctcacgggaaagacgccattttcgccgcgaaggaggttttcaagact
aacggggtcatcaagtatttgggctcagggagtcgtaagctggagagcgtggtgctgagc
aagctgaactttgaggcctttgtcaaagacttgctgctggtgaggcagtacagagtggaa
gtgtacaagaaccacagcaagagcagcaaggaacacgactggaaggtcgagttcaaggcc
tctccaggaaacttgactcagtttgaggagatcctgttcggtggtgcaaccggagcggag
ggttgtgcgggagttgtagccgtgcggcacgctacaggagccgacggacagcgcgtggtc
ggggtcggctatgtggacgcagcgcaaagaaagatgggagtgtgcgagttcccagacaat
gagatcttctccaacctcgagtccctgcttgtccagatcagccccaaagagtgtctctta
gcccagggcgaaggcaacgcagacggcaataaactacgggaggtggtgcagcgtggcggc
gtgctggtctctgacaggaagagagcagagtttagtagcaaggatgtggtccaggatctc
aacaggctgctgagggccaagaaaggagagactgtggccagcaacacgctgcccgagctg
gacaaacaggtggctatgtcgtgcttggctgcagtcgtgcgtttcctcgagttgctctct
gacgagtccaactttaactccttcagtctgaccacactggatctcggtcagtacatgagg
ctggacaacgctgctgtgcgggcccttaatctcttccagggatccccggacgacaccacc
ggagctcattcgttggccggtctgctgaacaagtgccgtacgccgcagggtcagcggctg
gtcaaccagtggatcaaacaaccgctcatggacaaaacgaaaatagaagagaggctggac
ctggtggagagctttgtatgcgactctgagctcaggcagacctgtcaggaggacttactg
cggcggtttcccgatcttcaccgcctggccaagaagttccaccgtcaatcggcgactctg
caggactgctaccgagtctaccaggctgtgagccacatccccgccctcatcacagctttg
gagagatactcaggaagctaccaggttctgttggaggcggtgttcctctctgctctccga
gacctgcagactgacttcactaagtaccaggagatgattgaaaccactctggacatgaac
cagatcgaccaccacgagttcctggtgaaggcgtcgtttgatccagtgttgagcgagctg
agagaaaagatggacgcgctggaaaaaagcatgcaggcggtgctgaacagcgcagccaga
gaactaggtctggatgccggtaagacggtgaagctggagtcaaattcaatgctgggtttt
tacctgagagtcacctgcaaagaggagaagaccctgaggaacaacaagcgcttcaccacg
ctggacgttcagaagaacggagtgcgcttcacaaacagcaagctgagcgctctaaatgag
gattacaccaagaacagggaggagtatgaggaggcccagaacgccatcgtcaaagagatc
atcaacatcgcctcaggttacgtggatcccctccagacgctgagcgacgtgattgcgcag
ctcgacgtggtggtgagtttcgccgtggcgtccgtctccgctcccgtgccgtacgttcga
ccccaactgttggcggacggctgccggcgaatggagctgcagcaggccagacacccctgc
atggagacggacgcggacaccgccttcatacccaacgacatcaccttcgtccagggagag
aagagcttctacattatcacgggaccgaatatgggaggcaaatcgacgtttatccggcag
gtcggcgtcatcgctctgatggctcagatcggatgctttgtgccatgtgagaaggcggag
ctcagcgtgatcgacagcatcctggccagggtgggagccggagacagccaggtcaaagga
gtgtccacctttatgtccgagatgctggagactgctgccatcctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggcagagggacgtccacgtacgacggctttggt
ctggcgtgggccatcagcgagcacatcgcctccaaaatcggctccttctgtctgtttgcc
actcacttccacgagctgacggcgctcgcagtgcagcacgcctccgtccgcaacctgcac
gtcaccgcgctgacttcccacaacaccctcaccatgctgtacagagtcaaaccaggtgtg
tgcgaccagagtttcgggatccacgttgccgagctggcttgtttcccgcctgcggtggtc
gccatggcaaaggagaaggcggaggagctggaggagtttcaggaacctgcgggggagaag
tctgagcaggaggaagagcccgaggccaaaagacgacggacagacaaacaagttggggaa
aacctgatccaggactttctggagaaggtgaagtcacttcctgctgccaccatgagcgac
gaagaggtgaagtcggcgctccggaaaatgaagcaggagctcgtcggcaaaaacaacacg
tacatcgcagagatcctcgctcgctgcgctcctgcaaaaacagcctga
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