Larimichthys crocea (large yellow croaker): 104923537
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Entry
104923537 CDS
T04659
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03030
DNA replication
lco03420
Nucleotide excision repair
lco03430
Mismatch repair
lco03440
Homologous recombination
lco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104923537 (rpa1)
03420 Nucleotide excision repair
104923537 (rpa1)
03430 Mismatch repair
104923537 (rpa1)
03440 Homologous recombination
104923537 (rpa1)
03460 Fanconi anemia pathway
104923537 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104923537 (rpa1)
03032 DNA replication proteins [BR:
lco03032
]
104923537 (rpa1)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104923537 (rpa1)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104923537 (rpa1)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104923537 (rpa1)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104923537 (rpa1)
MMR (mismatch excision repair)
104923537 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104923537 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
A_deaminase
Motif
Other DBs
NCBI-GeneID:
104923537
NCBI-ProteinID:
XP_010734968
LinkDB
All DBs
Position
VII:20606453..20631789
Genome browser
AA seq
614 aa
AA seq
DB search
MTKLTEGAIEALSNGSGINDAMLQLVNLRKIEGGNGPARFRVMMSDGRHTLSSFMLSTQL
NFMAEENKLAPNCVCILKRHVTNILKDGRRVVIILEIDVVKPAEDVAGRIGDPVPYTEGQ
NKGPQSAPVPENRAPVPENRAPVPENRAPLQQQNRNEVNRGFNKDFGKKAPSAMPSTPGG
NSKIVPISSLNPYQSKWTIRARVTNKSSIRTWSNSRGDGKLFSMEVVDESGEIRVTGFNQ
EVDKFFSLIEVGKVYYMSKGSLKIANKQYTSVKNDYEMTLNGESTIIPCEDGCDVPMMQY
DFVSIGDLENRDKDAIVDVIGVCKSVDEVTRLTTKTNREVSKRTVNLIDMSGKLVTVTLW
GEEAEKFDGSGQPILAIKGAKLSDFGGRSLSASFSSTLMMNPDIPEAHKLRGWYDNEGHA
MDGQSLTEMKGGSGGGNANWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACP
SQDCNKKVVDEQNGMYRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQ
NAAYLGQLKDSNESAFDEVFQQANFNTFVFRSRVKLETYNDESRIKATVMDVKPVDHRDY
SKRLIMNIRKLAAQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctcacggagggtgccattgaggctctttcaaatggctccggtataaacgac
gcaatgcttcagttggtgaaccttcgcaagattgaaggaggaaacggtccggctcgcttt
cgagtgatgatgagcgatggacgtcacactctgtcctccttcatgctctccactcagctg
aacttcatggctgaggagaacaaactggccccgaactgcgtctgcatactgaagaggcat
gtgactaatatactgaaggatggacgacgggtggtgatcattttggaaattgatgtggtc
aagcctgctgaggatgtagctggaagaataggtgaccctgtcccgtacactgagggtcag
aacaaaggcccacagtcggcaccagtccctgaaaaccgcgcaccagtccctgaaaaccgt
gcaccagtccctgaaaaccgtgcaccactgcagcaacagaacagaaatgaagtgaacaga
gggttcaataaagattttgggaagaaggccccatctgccatgcccagtactccagggggc
aactccaaaattgtgcccatctccagccttaacccataccagtccaagtggaccatccgc
gcacgtgtgaccaacaagagcagcatccgtacgtggagcaactctcgtggcgatggcaaa
ctcttctccatggaggttgtggacgagagtggagagatacgagtgactggtttcaaccaa
gaggtggacaagttcttcagcctcattgaggttggcaaggtctactacatgtccaagggc
tccttgaagatcgccaacaagcagtacacatcagtgaagaatgactatgagatgactctc
aacggagagtccaccatcatcccctgtgaggacggctgcgacgttcccatgatgcagtat
gactttgtctctatcggtgacctggagaacagagacaaagacgctattgttgatgtgatc
ggagtgtgtaagagtgtggacgaagtgacccgcctcaccaccaagaccaacagagaagtg
tccaaaaggacagtcaatctgatcgacatgtccgggaagctggtgactgtgacgctgtgg
ggagaggaagcagaaaagtttgatggctccggacagcccattttagccatcaagggggcg
aagctctcagacttcggaggccgatcgctctctgcatccttcagcagcaccctgatgatg
aacccagacatccctgaggcgcataagctcagaggctggtacgataacgagggtcatgcc
atggacggacagtctctgactgagatgaaaggtggcagcggtggaggaaacgccaactgg
aagactctatctgatgtcaagacggagcacctgggacacggagacaaggcggactactac
acctgcatagccaccatagtgtatctgcgcaaggaaaactgcctttaccaggcgtgtccc
agccaagactgcaacaaaaaggtggtagacgaacagaatggcatgtaccgctgcgagaag
tgcgacaaagagttccccaacttcaagtaccgcctcatcctttccgccaacatcgcagac
tatggggacaaccagtgggttacttgcttccaggagagtgcagaggccatcctgggccag
aatgcagcttacctggggcaactcaaggactcgaatgaatctgccttcgatgaggtcttc
caacaagccaacttcaacactttcgtcttccgcagcagagtgaagcttgaaacgtataac
gatgagtccaggatcaaggccacggtgatggatgtgaagcccgtcgaccacagggactac
agcaagaggttgatcatgaacataaggaaactggccgcccagtag
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