Larimichthys crocea (large yellow croaker): 104923644
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Entry
104923644 CDS
T04659
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X3
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104923644 (rc3h2)
04121 Ubiquitin system [BR:
lco04121
]
104923644 (rc3h2)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104923644 (rc3h2)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104923644 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_2
zf-RING_UBOX
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
DUF6213
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
104923644
NCBI-ProteinID:
XP_010735109
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All DBs
Position
IX:complement(6295784..6322576)
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AA seq
1150 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLSSAAEVENYEVCRVCVEELALYLKPISGAKGVAT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRAFPLAPGVMGKTFTMEGSIHTDVSA
GVGQGIKGTAENTANLTEGVPGLTHPQLISRGADMMEEMKRVVPNGSSGSNGSNGTNRNT
SGSTEQKPISPPRTPVSHSSASSPLTTVGRGDGGAPMPKHSQFVLRAPHPSQASEMYYQE
PHSAYDTAHYQPNSGSYYPSTLHPPHKSCMARFLRSSNVPESSLPPSIGPPPSSYPSDPQ
TPHPPSSSSTGYPPHPPRDRMGPPAFHPHPGQPQYGPLAPAHGVYAPLYDSRRVWRPQLY
HREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGAEHRAGLHRDYGRVPLGYEDLF
RRKQEQWAHHHHHHNANRPSQSSPIFTIDFGTEHVESSGSQCVGCRFRGEESLAHYSPWS
CGTIGPCLSPFEPETLTHTSAHSCSEHSELDSNGGGGGGGSGSGVGKRWLHLLDHSRRLK
DEDPIIPFSEGPIISKWGAISRASRTGYHTTDPVQATACQGSASTTPINFKDYNPHLDHS
DYRWSSRGSDSSSHSSFLESEQLCASELHGRRTSISSGEKIVSDLQAHQNAYSRDRSRAE
SEPDPDRDIELELCALDMEDSDHQEIKSQESLDLATPQSQDVSHLLPPPCSSPLLSSPVE
EHPHTEGPSTEKMDAHLLKKMAFRRSPGGLVSGRLGVGKPVLRTGPPRLGDTSTRACPET
TVTEMLLNGS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacagagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagtctgggctgctcccacacggtgtgtaagacc
tgcctacacaaactgcaccgcaaggcttgcccctttgatcagacacccatcagcaccgat
atcgacctgctgccggtcaactgtgccctgctgcagctggtcggagctcaggtcccagat
gtgcagccggtgagcctgagcagtgcagcagaggttgagaactacgaggtctgcagggta
tgcgtggaagagctggctctctacctgaaaccaatcagcggagcaaaaggtgtggcgact
ctcagcccgagcgtgctcagtcggcccatgcagaggaagttggtgaccttggtgaactgc
cagctggtggaggaggagggccgcgtgcgggcggtgcgggcaggacggtcactgggtgaa
cgaaccgtaactgaactcattctgcagcaccagaacccccagcagctctccgccaacctc
tgggcagcggtcagggcacggggctgccagttcctgggacctgctatgcaagaagatgca
ctgaagcttgttttactggctctggaggacggctcagctttgtccaggaaggtgttggtt
ttgtttgtagtccaaaagctagaggctcgcttcccccaggcgtccaaaaccagcatagga
cacgtggtgcagcttctctacagggcctcctgcttcaaggtgaccaagcgtgatgaggac
tcctcactgatgcagcttaaggaagaatttcggacgtacgaggctctgaggagagaacac
gacgctcaaatcgtccacatcgctatggaggcgggtctgcgaatttcaccagagcagtgg
tcttctctgctgtacggagatctggtccacaagtcacatatgcagtccattattgacaag
ttgcagtctccagagtcgtttgcaaagagcgttcaggagctgacgatcgtactgcagagg
acaggagaccccgccaacctcacaagccttagaccacacctagagctactagccaacata
gaccacaacccagatgccccggcgccgtcgtgggaggagctggaaagtgtgatgctggct
gtgaagttagtggttcacggacttgtggagttcatacagaacttcagcaagaagagccac
gacactccacagcctcaggcaaacagcaagtacaagaccagcatgtgccgagaccttcgt
cagcagggaggctgtccccgaggaaccaactgcacgtttgcacacacgcaggatgagctg
gagaaatttcgactgaggaacaagaagagcagcagtgtgggccgtgcgttccctttagca
cccggggttatgggtaaaaccttcaccatggagggcagcatccacacagatgtgtcagca
ggagtggggcaggggatcaaaggcacggcggagaacacagccaacctgacggagggagtg
cccggcctgactcaccctcaactgatctccagaggcgctgacatgatggaggagatgaag
agagtggtgccaaatggatccagtggttctaatgggtccaatggcaccaacagaaatacg
tcgggctcaactgaacagaagcccatctctcctcctcggactccagtcagccactcatca
gcgtcatctccgttgacaacagttgggcggggtgatggtggtgctcctatgcccaaacac
agtcagtttgtcctgcgtgcaccacatccttctcaggcatcagagatgtactatcaggag
ccccactctgcatacgacacagcccattatcaaccaaactcaggttcctactacccatcg
acccttcaccctcctcacaaatcttgcatggctcggttccttcgatcctccaacgtccca
gaatcgtccctcccgccctcgattggccctccgccatcttcctaccccagtgaccctcaa
acgccacacccaccttcctcctcttcgacagggtaccctccgcacccgcctagagatcga
atgggacctcctgccttccatccccacccggggcagcctcagtatggacctctggctcct
gctcatggtgtttatgctcccctctatgacagcaggagagtatggaggcctcagctgtat
cacagagaggatgccaggagtaactcactgcctccagaggtactgcattcctccgtctac
cagcctccactcagggagagattcaactctctagacagtaactactgctctggagctgaa
caccgtgcagggctacacagggattatggccgtgttcctctgggctacgaggatctgttc
agaaggaagcaggaacaatgggctcatcatcatcaccatcacaacgccaacaggccctcc
cagtcctcccccatcttcaccatcgattttggaactgagcatgtggaaagcagcggaagc
cagtgcgtggggtgcaggttcagaggcgaggaaagtttagcgcactactctccgtggtcc
tgtggtaccatcggcccctgcctcagcccctttgagcctgaaacgctcacacacacctcg
gctcactcctgctcagaacactcggagctggacagtaatggaggcggaggtggcggtggt
agtggtagtggtgtcgggaagcgatggttgcatttgttggatcactcccggcgcttgaaa
gacgaggacccgatcattcccttcagtgaggggcccattatctccaagtggggtgccata
tccagggcatctcgcacgggctaccacaccaccgaccctgtccaagccacggcctgccag
ggcagcgccagcaccacacccatcaactttaaagattacaacccccacctggatcacagc
gactacaggtggagctccagaggatccgactcttccagccactctagtttcctagagagt
gagcagctttgtgcatcagagcttcacggccgtcgaacttcaataagcagtggtgagaaa
attgtgtctgatctgcaagcccatcagaacgcctacagccgcgatcgaagccgggctgag
agtgaaccggacccggatcgagacattgagcttgaactgtgcgctcttgatatggaagat
tcagaccaccaggagattaagtctcaggagtctttagacctggccaccccacagtctcag
gatgtttcccacctcctcccacctccttgctcctctcctctcctctcttctcctgtggag
gagcacccccatacagagggtccttcgacagaaaagatggatgctcacctgctgaaaaag
atggccttcaggaggtctcctggagggttagtttccggacgtctgggcgtcggcaagccg
gtgctgcggactggacctcctcgcctgggggatacctccacccgggcttgtcctgaaaca
accgtgacagagatgctgcttaatggaagctaa
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integrated database retrieval system
