Larimichthys crocea (large yellow croaker): 104924025
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Entry
104924025 CDS
T04659
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03440
Homologous recombination
lco03450
Non-homologous end-joining
lco04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104924025 (rad50)
03450 Non-homologous end-joining
104924025 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
104924025 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lco03032
]
104924025 (rad50)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104924025 (rad50)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104924025 (rad50)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104924025 (rad50)
BRCA1-C complex
104924025 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
104924025 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
104924025
NCBI-ProteinID:
XP_027129380
LinkDB
All DBs
Position
XXII:2640707..2668314
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFDPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVSIHRSMSCTQKAKNYSFKSLEQVITR
VKDGEKVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQQRLKQSQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
IVQIENQIDPLENRLNDIDTKLGKVMKLDNDIKALDSRKKQMEEDNRELEETMEQVFQGS
DEQLQEIYQNHQRTVREKERRLTDCQKELEKAGRECQRINRVKADLLVEQGRLQLEADRH
SQNIKNRDTQVRSLASYLEMEGYDRTPFTTLQLQSFNRHVTERLEQEKETVSQVLADLQE
KEQLKQQSIDEMRDKKTGLERTVELKRDMQGKKQQELRNIRGDLQRLEGSSSRLQELESE
LAKAERELQTAVQSSNVEELKAEVTELQREKAELDRTQRQLDKVMEMLNAHTTTRTKIDM
LKREKAEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYSKSKEVNGTRDRLAKLNKD
LASNEQNKNHIAAEIRKKEEQLANDQEKFFNVCGSQDLEQDLGRLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPAESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDDMVALRPVRHSIVQFQEKELPELRNRLQTVNREIERLKGDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQDAAKLQGVDLTKTTQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDRIQILKSAVNETRAEKLQLSSDMQKQQQLEDQCVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQEVVERKRQRQEEGQEKINAIKDRVKAVTTLERE
ITKYVDDGKDEYKEQKESELQETNTQLHEAERNKDKVTKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKREALMKDMGNMQVLQLRQERREAERKLEDLKKNRSIALGRQKG
FEEEILHYRKELREDQYDKADERYKDKMITMKTTELVIKDLDLYYKALDQTIMKFHSMKM
SEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatagacaagatgagcattttgggggtgaggagctttgggattgaggataaa
gacaaacaagtcatcagtttcttcgatcctctgactgtgctggttggacccaacggagca
gggaaaacgaccattattgagtgcctgaagtatgcaacatcaggagaacttccccctgga
tctaaaggaggtgcttttgttcatgatccaaaggacgcccacgaaacagacgtacgagca
cagattcggctcttattcaccgacgtcaatggagagaaggtgtccatccatcgctccatg
tcctgcacacagaaagcaaagaactactccttcaaaagcttggagcaggtcattaccaga
gtaaaagacggcgagaaggtgagcttgtcatcaaagtgcggcgaactggatcgtgagatg
atttcttcactgggtgtgtcgaagcctgtgctgaatcatgtcatcttttgtcaccaagaa
gagtctaactggccattgagcgagggcaaagcactcaaagacaagttcgactccatcttc
gctgcaaccaagtatatcaaagctctggagacgatgcgtcagcagcgtctcaaacagagt
cagaccgtcaaagagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaagcc
cagcagattagagagacggttgccaccaaggaggctcagctaatggcctctaaagacagc
atcgtacagatagagaaccagattgatccactggagaatcgactaaatgatattgacacg
aaactggggaaagtgatgaagctggacaacgacatcaaagctttagatagcaggaagaag
cagatggaggaagataacagagaactggaggaaacaatggaacaggtgtttcagggttca
gatgagcagctgcaggagatttaccaaaaccaccagaggacggtgagggagaaagagcgg
aggctgacagactgccagaaggagctggagaaagctggtcgggagtgtcagagaatcaat
agagtcaaggctgatctcctggtggaacaaggtcgtctacagctggaggctgaccgccac
tctcaaaacatcaagaaccgcgacactcaggttcgttctttggcatcctatctggagatg
gagggttacgaccgaacgcccttcaccactctgcagcttcagagctttaatcgtcacgtc
acagagagactggagcaggaaaaagagacagtcagtcaggttctggctgacctgcaggaa
aaggagcagctgaagcagcagtccattgatgaaatgagggataagaagactggcctggag
agaactgtggagttgaaaagagatatgcagggaaagaagcagcaagaactgaggaacatc
aggggagacctgcagaggctggagggttcgtctagccgactgcaagagctggagagtgaa
ctggccaaagcggagcgagagctgcagactgcagttcagagctcaaacgtggaggagctg
aaggccgaggtcacggagcttcagagagaaaaggctgaactcgaccgcacacaaagacag
ctcgacaaagtgatggagatgctcaacgcacacaccaccacgcgcacaaagattgacatg
ttgaaaagggaaaaggcagagaaggaggagcaggtacgtaagatcaagtctcggcacagc
gaggatctggtgtcattgctgggccactttcccaacaagagagagctggaggactggatt
tattccaaatctaaggaagtcaacggtaccagagacagacttgccaaactcaataaggac
ctggcatcaaatgagcaaaataagaaccacattgctgctgagatccggaagaaggaagag
cagctagccaatgaccaagagaagtttttcaatgtgtgtggcagtcaggatctggagcag
gatctgggcagactgcaagaagatctggagaagatctccaaacaaagagccatgttagct
ggagccacagcagtgtacacccagttcatcagtcagctgacagaggagagagaaccctgc
tgccccgtgtgccagcggacattccctgcagagtccgatctgcaggaagttatcagtgac
atgcagtcgaagctacgcctggtaccagacaagctgaaaaacactgagcaggatctgaag
aggaaggagaggaagagagatgacatggtggctctcagacctgtcaggcactccattgtg
cagtttcaggaaaaggagttgcctgagctgagaaatcgcctgcagactgtgaacagggaa
attgagaggctgaagggtgatgtggaggagcaggagactctgcttggtacattaatgtca
gaagaggagacagctaaggcctgcctgcaggacatctctctcatggacagatacctgatg
gaccttaaagaggtggagaggaaaatcgctcaagatgctgccaaactccagggagtagac
ttgaccaaaaccacccagcaagtcagtcaggagaaacaagaaactcagcacaagctagac
accacctccagcaagatggagttaaaacgaaagctgatccaggaccagcaggatcggatt
cagatactgaaaagtgctgtaaacgagacgagagcagagaaactccagctgagcagtgat
atgcagaaacagcagcagctggaggaccaatgtgtcgagttcaccactgaaatacaggcg
ttaaccagagacatcagggaagcaaaggagcagctgtcccctttgtctgctgctctagag
aagctgcaacaggagaagcaggaggtggtggagcgtaagaggcagaggcaggaagagggg
caggagaagattaatgccattaaagacagagtgaaggcggtcaccaccttggaaagagaa
atcaccaaatatgtagatgatggcaaagatgaatacaaagagcaaaaagagtctgagctt
caagaaaccaacactcagctccatgaggctgagagaaataaagataaggtcaccaaggag
atgggaaacatccgtcaggacatagacactcaaaaggtccaggagcggtggttgcaggac
aacctgaccttgaggaagcgcgttgaagagttaaaggaagttgtggctaaacgcgaggct
ctaatgaaagacatgggcaacatgcaagtcctgcagctacgccaagaacgtcgtgaagca
gaacgtaagttggaagacttgaagaagaaccgcagtattgcactgggtcgtcaaaaaggc
tttgaggaggagatactgcattacagaaaagagctgcgagaagatcagtatgacaaagct
gatgagcgctacaaggacaagatgatcacaatgaagaccacagagttggtcattaaagat
ctggatctctactacaaggcccttgatcagactatcatgaaattccacagcatgaagatg
agcgagatcaataagatcatcagagacctgtggcgcagcacctacaggggtcaagatatt
gaatatgtggagatcaggtctgatgtggatgaaaactcgtctgctggagtgaggcggagg
gtttacaactacagagtagtcatggtgaaaggagacacggctttggatatgagaggacgc
tgcagtgccggacagaaggtgttggcatctttgatcatccgtctagctctggcagagacc
ttctgtctcaactgtgggattctggccctggatgagcccaccaccaacctggaccgagac
aatattgagtcactggcacatgctctcgtagaaatcattaaaagtcgctctcgtcagcgt
aacttccagctgctgatcatcacccatgacgaggatttcgtagagctgctgggacgctcc
agctacatcgagcacttttaccgcatccgtaaaaaccaggaccagaactctgagatcaca
aagtgcagcatcacctccctttcatcctatctccactga
DBGET
integrated database retrieval system
