Larimichthys crocea (large yellow croaker): 104924171
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Entry
104924171 CDS
T04659
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104924171 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104924171 (trip12)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104924171 (trip12)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
HECT type E3
104924171 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
WWE
Motif
Other DBs
NCBI-GeneID:
104924171
NCBI-ProteinID:
XP_010735729
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All DBs
Position
VII:9215599..9241975
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AA seq
2057 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKANSPPESRRSNSKASKAT
ASSATGQSRGHSSRRSGLTLSVASFVLQDEPEAAGTSEQERPGHQSKSEGTRGLKRSEAP
DQISTFGPTPAKKPKSLPPPRDNTSETKKGSAKSKKRPVASEPPASSGRGQSKKSGAAGA
SPIQKRKKADSLPGLSSTAGSLPNRTEGRTAKPTKLASKSAASAKAGCSNVTDSSSSAST
SSSSSTTGTNSNTTQGARVKQGKDQTKARRSRSASSPSPRRSTRDKEQAKSASSSKFEWA
ARFNPKVNLPKPKLSLPGSSKTETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRS
PRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDSNQDGANSSAARTDEASQGASAS
SSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASS
KAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFD
IMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLKVIQFIDVAEQALTALEMLSRRHSKA
ILQANGLADCLVYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQDK
KSVESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMFS
LMCSNCPCLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELMP
CLPREGIFAVDVMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISL
STLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNTGSHQEVRREDARAQLMKEDPE
LAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSHIAS
MLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLSESESFLVTSPPKACP
SGTASLCTTTISTASTTSANNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRG
PRRPKYSPPRDDDKVDNQAKSPTSTQSPKSFLASLNPKTWGKLGAQTNNANSEPSRTAGV
SGLARAPPKDSISNNRDKIKAWIKEQASKFVERYFNSENVDGSNPALNVLQRLCTATEQL
NLQVDGGMECLVEISSIVSESDVSSFEIQHSGLVKQLLVYLTSNSDRDLLSRDVRLKRFL
HVFAGCPVPGMEPVGRLDPSENGPYLALVHKMNSCLSQMEQFPVKVHDFPSGNGNGSRGS
QALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDE
DSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEEERE
STDDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTSPRNAKKQD
ELWHDGVCPSVINPLETYLTSEPPETITFDDPSLEVNLLLRVLHSISRYWFYLYDNAVCK
EIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQMLFYVTA
FDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRAM
LEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEGTKYMFSTRG
LFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHEMSISS
HDLVNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTRETLQQALESLNMNGCSVEDLGLDFT
LPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPLHHLQ
YFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFL
QFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIETMR
EKLLIAAREGQQSFHLS
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagtcgcaggaaggttgcagtcagagcaggtaaaa
cataaagcaaattccccacctgaaagtagaagatctaattctaaggcttccaaagccaca
gccagctcagccactggccagtccagagggcacagctcaagaagaagcggtcttactttg
tccgtggcttcatttgtgttgcaagacgagccagaggctgcagggacatctgaacaagag
cgaccaggccaccagtcaaagagcgaaggcacccgagggctgaagcgaagcgaagctcct
gaccaaattagtacttttggaccgacccctgccaagaagccgaaatcgctcccaccaccc
cgagacaatacctcagagaccaagaaaggctcagctaagtccaagaagagaccagttgct
tcagaaccacctgcatcgtcaggtcgaggccagagcaagaagagcggggccgctggggcc
tcaccaatccagaaacggaagaaagcggactctctccccggtctaagtagcaccgctggg
tccctccccaatcgtacagagggcagaactgcaaaacccaccaagctggcgtctaaatcg
gcggcctcagccaaagctgggtgtagcaacgtgacagactcctcttcctctgcctccacc
tcttcctcttcctccaccacaggcaccaacagcaacaccacgcagggcgcccgagtcaaa
caagggaaagatcagaccaaggcacgtcgctctcgttcagcctcaagcccctccccacgc
cgtagtacccgtgacaaggagcaggccaagagtgccagctcttcaaaatttgagtgggca
gcacgctttaaccccaaagtcaacctgccaaaacccaaactgtccttgcccggatcctcc
aaaactgagacctccaaacctgggccatcaggactacaagctaaactagcaagtttgagg
aaatccactaagaagcgcagcgagtctcctccagcagagctccccagctttcggcggagc
ccacgccagaagaccacgggctcctgtgccagcaccagtcggcggggctcaggcctgggc
aagcgcggggcagccgacgctcgccgacaggagaaaatggccgactccgacagcaaccag
gacggggccaactcgtcagccgctcgcactgatgaggcatcacaaggggcttcagcctca
agctcagttgctggagcagtgggcatgaccacctctggggagagtgagtctgatgactct
gaaatgggaaggcttcaagccctactggaggcccgaggtctccccccacatctttttggg
cccctaggaccccgcatgtcacagctgtttcacaggaccattggcagcggagccagctcc
aaggctcagcagctcctgcagggcctgcaggccacaggcgacgagtctcagcagctccaa
gctgcgattgagatgtgccagctgctggtgatgggcaacgaggaaacacttggtggattc
cccgtcaagagtgtggttcctgctttgattacactgttacaaatggagcataactttgat
attatgaatcatgcctctcgtgcactcacatatatgatggaggcactccctcgatcctct
gctgtggtagtcgatgctattcctgtcttcctggagaagcttaaggtgatccagttcatt
gacgtagcagagcaggccctgacagccttggagatgttgtcaaggcgacacagcaaagcc
attttgcaggctaatgggcttgctgactgtctcgtctacctggagttcttcagcatcaat
gctcagagaaatgctttggccatcgcagctaactgctgccagagcatcacgccagacgag
tttcactttgttgctgattccctgccgctgttgacacaaagactcacacaccaggataag
aaatcagtcgaaagcacttgtctatgttttgccagactggtagacaactttcaacatgaa
gagaacctgctgcaggaggttgcatcccgggacctgttgaccaacattcaacagctgctg
gtagtgacccctcctgtgctcagctcggggatgttcatcatggtcgtgcgcatgttttca
cttatgtgttctaactgcccctgcctggcagttcagcttatgaagcagaacatagcagaa
actctgcgtttcctcttgtgtggtgcatcaaatggcagctgccaggagcagattgaactg
gtacctcgaagcccacaggagctctatgaattgacctccctcatatgtgagctgatgccc
tgcctgcctagagagggcatctttgcagttgatgtaatgctgaaaaagggcagcgcccag
acgacagagggagcgatctggcagtggagggacgaccggggactgtggcatccttacaac
cgcattgacagccgcatcattgagacagcacaccagaacggggaggatgagatcagtttg
tcaaccctgggccgtgtgtacacaattgacttcaactctatgcagcagatcaatgaagac
acaggaacagcacgcggtatccagaggaaaccaaatcctctcgccaaccctaatacaggg
agtcaccaggaggttcgtcgagaagatgcacgagcccagttgatgaaggaggaccctgag
ctggcaaagtgctttatcaaaactctgttcggggtcttgtatgaggtgtacagctcatcg
gctggccctgctgtcagacacaagtgccttagagccatcctcaggatcatctactttgct
gatgcagagctgctgaaggatgtgctgaggaaccatgctgtgtccagtcacattgcctcc
atgctgtccagccaggacctgaagattgtagtgggttctctacagatggctgagatcctc
atgcagaagctgcctgatgtcttcagtgtctatttcagaagagaaggtgtgatgcaccag
gtgaagaacctgtcagagtccgagagctttctcgtcactagtcccccaaaggcttgcccc
agtggtactgccagtttgtgcactaccaccatcagcactgcatccaccacatctgctaat
aatgcaactcctgatctgggctcgcccagcttccagcacagcatggacgactcactggac
ctcagcccacaggggcggttaagcgacgtcctaaagaggaaacggctacctaaaagagga
cccagaaggcccaaatactcccccccaagagatgatgataaagtagacaatcaggccaag
agccccaccagtactcagtcacccaaatccttcttggccagtcttaatcccaagacctgg
ggcaagctgggtgcccagaccaacaatgctaactcagagccctcacgcacagcgggtgtg
agtggcttggcgagggcaccccccaaggactctatttcaaataacagagacaaaataaag
gcctggatcaaagaacaggcaagtaagtttgtggagcgctacttcaactctgaaaatgtg
gatggcagcaaccctgcactgaatgttctccagagactttgcacagccaccgagcagctc
aacctgcaggtggacggcggcatggagtgcctggtggagatctccagtattgtatcagaa
tctgatgtgtcgtcttttgagatccagcacagcgggctcgtgaagcagctcctggtctac
ttgacctccaacagcgacagggacttgcttagccgtgatgtgcggcttaagaggttcctc
catgtgttcgctggctgtccggttccaggaatggagcctgtaggtcgtttggatccatca
gagaatgggccgtacctggcgctggtgcacaaaatgaacagctgcctgagccaaatggag
cagttcccagtcaaagtgcatgatttccccagtggtaacggcaatggcagcaggggctct
caggcactgaagttcttcaacacacaccagctcaagtgtcagctgcagagacacccagat
tgcactaatgttaaacagtggaaaggtggccccgtgaagatagaccccctggctctggtg
caagccattgagagatatcttgttgtcagagggtacggccgaatcagagaagaggatgaa
gacagtgacgatgatggttcagatgatgaaatcgatgaatcactggcggcacagttcctg
aactctggcagcgtgcgtcacagactacagttctacattggtgaccacctgctaccatac
aacatgacagtataccaggctgtacggcagtacagtctgcaggcagaagaagaaagggag
tcgacggacgatgaggcaaacccactcgggcgagccggcatctggaccaaaacgcacaca
atatggtataagcctgtgagagaggacgaggacggcagcaaagatgctgtgggtggaaag
aggggccgagcccagactgctcccaccaaaacctcacctcgcaacgccaagaaacaggat
gagctgtggcatgatggtgtgtgtcccagtgtcatcaatcctttagagacatacctcact
tcggagccaccagagaccataacctttgatgacccctctttagaggtcaacctgctgctg
agggtcctgcactccatcagtagatattggttctacttgtacgataatgctgtgtgtaag
gaaattattcctaccagtgagttcattaacagtaagctgacagccaaagctaaccgtcag
ctacaagacccgctggtcatcatgacggggaacatccctacttggctcattgagcttgga
aagacctgccctttcttcttcccctttgacacccggcagatgttgttctatgtaactgcc
tttgatcgcgacagagccatgcaacgcctactggacacaaaccctgagatcaaccaatca
gattctcaggacagcagagttgccccacgtcttgacaggaagaagaggacgataaaccgc
gacgagctgttaaaacaggctgagtctgtgatgcaggacctaggcagctccagggcaatg
ttggagatccagtatgagaacgaggtcggcacagggcttggccccactctggagttctac
gctctggtgtctcaggagcttcagcgggccgatctcggcctgtggaggggcgaagaagtc
acgctggccaatcctaaaggaagccaagagggaactaagtacatgttcagcaccagagga
ctgtttgctgttcccttcggcaggacgaccaaaccagcacacatagccaaaatcaaaatg
aagttccgtttcttaggaaagctgatggccaaagccattatggacttcagactgctggac
ttgcccctggggctgccgttttataagtggatgctacggcatgagatgtctataagctcc
catgacctggtgaacattgatcccggcgtggccaagtccattcagcacttggaggatatt
atccgccagaagaagaggctggaacaggaccgatcacagacgagggagaccttgcagcag
gcactggagagcctgaacatgaacggctgctcagtggaggatctgggtttggacttcacc
cttccaggattcccaaacattgagctgaaaaagggcggcaaagacgtcccagtcacgatc
tacaacctggaggaatacctgaggttggtggtttactggactctaaatgaaggggtgtcc
agacagtttgagtcatttagggaagggtttgagtcagtcttccccctccaccaccttcag
tatttctacccagaggagcttgaccagttgctgtgtggcagtaaatctgagacgtgggat
gtcaagacgctgatggagtgctgtcgaccggaccacggctacacacatgacagccgtgca
gtgcggttcctgtttgaggtgttgagcagcttcgacgccgagcagcagagactgtttctg
cagtttgtcacagggagcccgagactgcccgttggaggtttccggagcctgaatccacct
ctgacgatcgtgaggaagacgtttgagtcgacagagaacccggacgacttcctcccctca
gtcatgacctgtgtcaactacctgaagctgcctgactactccagcatagagaccatgcga
gagaaactgttgattgcagctcgcgagggccagcagtctttccacctttcctga
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integrated database retrieval system
