Larimichthys crocea (large yellow croaker): 104924211
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Entry
104924211 CDS
T04659
Symbol
synpo
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
104924211 (synpo)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Phage_Mu_Gp45
DUF4998
Motif
Other DBs
NCBI-GeneID:
104924211
NCBI-ProteinID:
XP_010735787
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All DBs
Position
I:38955471..38972019
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AA seq
1179 aa
AA seq
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MEMEKGHMPIRRGVSWSPGGLRKPLQATQNMHTTGTECNASWEKTGLNKEQMSRKTNLTR
SASLSEKELKEARVRSQIIAAQLTIPSNSSSRGVQLFNRRKQRVNAFTLESCGEGSEEDR
AENVKTDPSSNKLTWAERSSEEKDRDLNFKNSTTRPLLSPPGRVHSVSDITEGSGKDFHK
EEHMEDHVIQERHFLPVKEEQEEEDEAGNKIHEELEDKVKDEIPPGSNNADPVLIGHAEG
EAEINGGHTRPAPPGKLHNGCHSTSGPERASVPTAKQPSTIINRTARPFFSPLTVQSPEA
VSPVMEIPPPPSYSTPPLPAFTAPLPVAFSPPPPPSYPTPPLPAFTNQPPQAYYSSPPPM
SSVMSPSSPPPSQFPVPSLSQYPPMPHYGPPTAPKPSTFVPQPAGERKQMTSIKTGILEE
GAVRRANRKAMFTFKEKPVVAPNPELLSLVQGADERKKYGHRSVPEPGSEEELLALGAEA
SNFLAKEEDTADEARAPEWSSCLKSSRTRPRAEHRPEQNLTDVSGKGAELFAKRQSRMEK
YVVEKQNAGQVRSPSPTMSLPPSWVYPSNMPGRVKAIAKSSDMSAQLSQNLKAQQAVKQK
PRKKAPTPEPIPEPPLLENGCSKIEMDLSRHRPYQINSSLFILNPTKDPLSTLPRGAPQS
KNMMSATTFSRQSSLPNNSSPFTTQCMSPQLPLSPTRGAEYPSNQVSGQPRISSPMSAFS
PERVSSPRSTIQAPRPTFSAKKAGIAPQIQKDSSPVETPSETPTPTRTPSLTRRFSSPEG
PATGTWSPSRQTNHPTNTISNRSITSPVSTPRGTRCQSPMANQNIQFSTVTSSTTSRPSQ
TSTVTSPPWGSRCQSPLLNQNTQATISSTSGLRPFQTSSTTSPISPPWGSRCQSPLVSQH
AQTSTVTSMYTSRPSQTSTITSPRSPPWGSRCQSPMVSQNTQSSTISSVPSSRPSQTITS
PWGSRCQSPMVSQNTSTVVSTPRPNQTSSATSPVSPPWGSRSQSPALSQTSLSFPATKSL
YTSSAISPVTPPKDSRCMSPITNNPDSKANHRLLAKNIINAAKRKNSPSPKALSGHSLPI
SPLGNSHHGYDSHKPPISPFQSRALGAQSPTFTSPPPTPTQRICSPVRLYNTRSLTDSDA
SVESEDSGLRSPGLHSYNTCPRGWGGSLRVKRSTVSTDL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagaagggacatatgcctatcaggagaggggtgagctggagtccaggagga
ttgagaaaacctctccaggcaacgcaaaacatgcacaccactgggacagagtgcaatgca
tcatgggagaagacaggtctcaacaaagaacagatgagccggaaaacaaatctgacccga
agtgccagtttgtcagagaaggagttaaaggaggctcgtgtgaggagtcagattattgct
gctcagctcaccatcccttcaaactccagctccaggggcgtgcagctcttcaaccgacgc
aagcagagggtcaacgcctttacacttgaaagctgtggagagggttcagaggaggacaga
gctgagaatgtgaaaaccgacccctcatctaacaaactaacatgggcagagaggagcagt
gaagaaaaggatagagacctgaactttaaaaatagcactaccaggccactcttgtcacca
cctgggagggtacattctgtaagtgatatcactgagggttcaggtaaggattttcacaag
gaggagcacatggaggaccatgttatccaagagagacatttcctccctgtcaaggaggag
caggaggaagaggacgaggcagggaataaaatccacgaggagcttgaggacaaagtcaag
gatgagattccccctggaagtaataatgctgatccagttctgattggacacgctgaaggg
gaagcagagataaatggaggccacacacggccagctccccctggaaagcttcataatggc
tgccacagtacctctggacctgagagggcgtctgtacccacagccaagcagccaagcact
atcatcaatcgaactgccaggccctttttctcgccgctgacagtgcagtctccagaggca
gtcagccctgtcatggagatcccccctcctccttcttactccactcctcctctccctgct
ttcactgctcccttacctgtggcattctcacctccgcctcctccgtcatatcccacacct
cctctaccagcctttacaaaccagcccccacaggcctactactccagtccacctccaatg
tcttccgtcatgtccccttcctctcctccaccctcccagttccctgttccttctttatct
cagtacccacccatgcctcattatggccctcccacagctcccaagccctctacatttgtt
cctcagcctgctggagaaaggaagcaaatgacatcaataaaaacaggaatacttgaggag
ggcgctgttagaagggcaaataggaaggcaatgttcacgttcaaagagaagccagtggtg
gctccgaaccccgagctgctctccctggtacagggggcggatgaaaggaagaaatatgga
catagatctgtgcctgagccaggatccgaggaagagttgctggcgttgggtgcagaagcc
tccaactttctcgccaaggaagaggacacggccgacgaggcaagagctccagagtggtct
tcctgcctcaagagctccaggactagaccgagggcagagcacaggccagagcagaacctc
accgatgtatccggaaagggggctgagctgtttgccaagcgtcagtccaggatggagaaa
tatgttgttgagaaacaaaatgcaggacaagttaggtctccttctcccacgatgtctctt
cctccatcttgggtgtacccgtcaaacatgcccggcagggtcaaggctattgctaaaagc
tctgacatgagcgctcagctttcacaaaacctaaaggcccaacaagcagtcaagcaaaag
ccaaggaaaaaggctccaacaccagagccaattccagagccacctcttttagaaaatggt
tgctccaagatagagatggacctgtcaaggcaccggccttaccagatcaactcttccctc
ttcatccttaacccaactaaggaccccctgagtaccctacccagaggagcaccacagtcc
aagaacatgatgtctgccacgactttctcgagacagtcgtccttacctaataactcttct
cccttcactacccagtgtatgtccccacagttgcctctcagtcccacaagaggagcagaa
tatccatcaaatcaagtctctgggcagccaaggatcagttcacctatgtcagccttttct
ccagagcgagtgtcttctcctcggtcaacaatccaggcaccaagacccacgttttctgcc
aagaaggcagggattgcgccacagatacaaaaggactcctccccagttgaaacccccagt
gagactcccacgccaaccaggacacccagcctcaccagacgtttcagcagcccagaaggc
cctgccactggaacctggtctccgagccgccaaacaaatcaccccaccaacaccatctct
aaccgatcaattacttcccctgtatccactcccaggggtacaagatgccaatcccctatg
gccaatcagaatatccaattttccactgttacctcctctacaacatccagaccctcccaa
acatctacagtcacctcgcctccttggggttcaagatgtcagtccccactgctgaatcag
aatacccaggccaccatctcctccacttctggtttgaggcctttccaaacttcttcgact
acttctcctatttcccctccttggggttcaagatgccagtcccctttggtaagccaacat
gcccaaacttctactgtcacctccatgtacacatccagaccctcccaaacctccacaatc
acatccccacgttctcctccttggggatcgagatgtcagtcccccatggtgagtcaaaac
acccagtcttccacgatttcctctgttccttcatccagaccttcccaaacaattacttct
ccttggggttcaagatgccagtccccaatggtaagccagaatacttccactgttgtctcc
acacctagaccaaatcaaacatcttcagccacatctcctgtctctcctccttggggctca
cgttcccagtctcctgcactctctcagaccagtttatccttccccgctactaaatctctg
tacacatcctctgccatctctcctgttactccacccaaagacagtcgctgcatgtcccct
atcactaataatccagactctaaagccaaccatcgcctcctagccaagaacatcatcaac
gcagccaaacgtaaaaacagcccctctcctaaagcactgagtggtcacagcctccccatc
tcacctctgggaaattcccaccatggttatgactctcacaaaccacccatcagtcctttc
cagtcacgggctttgggggcccagtcccctactttcaccagccctcctcctacacccaca
cagaggatctgctcccctgtgaggctctacaacactcgctccctcacagactctgatgcc
tctgttgagtctgaagactcaggcctccgatcgccaggcctgcactcctacaatacctgt
ccacgtggctggggtggtagcctgagggtgaagagaagcaccgtctccacagacctgtga
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