Larimichthys crocea (large yellow croaker): 104924362
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Entry
104924362 CDS
T04659
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104924362
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104924362
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104924362
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104924362
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104924362
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
104924362
NCBI-ProteinID:
XP_019111941
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All DBs
Position
X:10302999..10343983
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AA seq
1374 aa
AA seq
DB search
MQRLGAVHSSAAQALSLVVLVLQLLTQLPGADSALRYRVAEEGPPDVKIGNVAADLGLTA
GTGSGDVTFALESGSEFFKIDNVTGELTTGPRRIDREKLPQCQMIFDENECFLDFEVSVI
GPLQSWVDLFEGRVVITDINDNTPSFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNGI
DRYELIQDGGAGSSSTRRTAGGNPITRVDGLGDRRGRTGDNGGGARSTVFELQVADIPDG
EKQPQLIVKGTLDREQKDSYELVLRVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTYE
AEMAENAPPGTPVLQVRASDRDIGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRID
REEVAQLRFTVMARDRGQPPRTDRTTVILAVRDENDNVPVVEIRKIGRIPVRDGAALVPE
NVLVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETALPPLPADEAFDRNKKKY
FLHTSALLDYETTKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHAPTFAQSVVEVHFA
ENNSPGERVVTVVATDADSGKNAEIAYTLDPAGNGPFYIDADNGDIRATGVLDREQRERY
ELRVIAKDKGTPSLQGSATVVVQVTDRNDNAPKFVQEIFTFYVKENLLANSPVGMVTVTD
ADEGENAELSLFVEMDGVDEKKAGEKAEGEDGEKEQEEVFSIENNTGTIFSSASFDREKL
STYTFRVRAVDGGEPRKTATATVSLFVTDENDNAPSITSPANESYTLLPPASSARTIVRT
VTAIDSDTGPNADLRYALVGGNPFRLFEIGHTNGVITLAEPLERRHRGLHRLVVRVNDSG
APSLCATALVHVFINESLANATLVDAQVARSLMAPLSLDIAGDPDSERALGKQRLSVAIG
VLAGAAAVILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPPGAQPQAGRGRGSDRGR
KPRRDKRNGSGGSAVAGGGKSDRSLYSGIVTVNGLRRHANDDDEEDLSSASERLAARYCV
VDGDPGSPRMGGGRRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQDLPPSNT
FVGSGGCVGSAGSSSSSSGGSGNADAMSLGSDQCSEYGCQTGNKYSKQGTLRRVTFSVVS
QPQDGGCYDSGMEDSETPSSKSSSGPRLGALPLPEEGYERTTPEGSVGEEEHVENDARQL
PDVALTGKCTRECDEFGHSDTCWMPVRPSPRQRQRHGSDPPRLSTFAPGDDNNNLRGNDH
ESDSESAGSAGSSEPGVVVGGEGQRLPLANGDPLGTLGRGDRNRNMGDHNRNLLNRKMTS
ASYDTFSSAGFGRRQQEEDGGEGQNPPEVIPLTRTGGDYKTTSCLTLSRREVYL
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcttggtgcagtgcactcctccgcggcgcaggctctcagcctcgtggtctta
gtgctgcagctgctgactcagctaccgggtgccgactcagctctccggtaccgggtggcg
gaggagggcccacctgacgtcaagattggcaacgtggccgcagacttgggtctcacggcg
ggtacgggcagcggggatgtcaccttcgccttggagagcggctcagagttcttcaagatt
gacaatgtgacaggtgagctgacgacaggcccgcggcgcatcgacagagagaagctccca
cagtgccagatgatctttgatgagaatgagtgtttcttggactttgaggtgtcagtgata
gggccgctgcagagttgggtggacctgtttgaaggccgcgtggtcataacagacatcaat
gacaacacaccttccttcccctcacctgtgctccagctctcagttgaggagaatcgccca
ataggaaccctttacctgctgcccacagccactgacagggattttggacggaatggcatt
gaccggtacgagctgatccaggatggtggagctgggtcaagttcaacaagacgcacagca
ggaggaaaccccattactagagtagatggacttggggaccggaggggtagaactggagat
aatggaggaggagccaggagcactgtgtttgaactacaagttgcagatataccagatggt
gaaaagcaaccacagctcattgtgaaaggtacattggatcgtgagcaaaaagactcctac
gagctcgtcctcagggttcgagatggagggaacccaccacgatcctctcaagcactgcta
cgtgtttccatcactgatgtgaatgacaacagcccacagttcgagaggtccacctatgag
gccgaaatggcagaaaatgctcctccgggaacacctgtcctccaggtcagagcttctgac
cgtgacattggagttaacgggcaggtggagtacgtctttggagctgccaccgaatccgtc
aggcgactccttcggctggacgaggcaactggttggctgagtgttcttcacaggattgac
agggaagaagtggctcaactgaggttcacagtaatggcccgagaccgaggtcagccaccc
cgcaccgaccgcaccaccgtgattttggctgtgcgggatgaaaacgacaacgtcccagtc
gtagagatccgaaagatcggacggatccccgttcgagatggagcagcattggttccagag
aatgtcctggtggacacacctgtagctctggtgcaggtgtcagatcgagaccagggagag
aacggggctgtgacgtgcaccgttgtgggagacgtcccattcacattgaagccagctggt
gaaacagcactcccacctctacctgcagatgaagcctttgacaggaataagaaaaaatac
ttcttacatacttctgccttgctggactatgagaccaccaaagagtacagtgttactatt
gtggcagtagattctggcagccccagtctgtccagcaacagctccctgatggtgcgagtc
gtagatatcaatgaccatgctccaacctttgcccagagcgtcgtggaggtccactttgcc
gagaacaactcacctggtgaaagggtggtcactgttgtagccacagatgcagacagtggc
aagaatgcagagattgcatacaccctggatccagctggtaatgggccgttttacatagac
gcagataatggagatatccgtgccaccggtgttctggaccgtgagcagcgagagaggtat
gaactccgggttattgccaaggacaagggcaccccatctctgcaaggctctgccactgtt
gtcgttcaggtgaccgaccgcaatgacaacgctccaaagtttgtccaggaaatctttact
ttctacgtgaaagagaacctgcttgccaacagcccagttggcatggtcactgtgaccgac
gccgatgaaggcgagaatgcagaacttagcctgttcgtagagatggatggagttgatgag
aagaaggcgggagagaaggcagaaggggaagatggtgagaaggagcaagaagaggtgttt
tccattgagaacaacacaggaactatcttctcttcggcatcgtttgaccgtgaaaagctt
tccacctacaccttccgcgtccgggcagtggatggaggagagccacgcaaaactgccacc
gccactgtctcactctttgtgacagatgaaaacgacaacgccccctcaatcacctctcca
gccaatgagtcctacactctccttccacctgccagcagcgcccgcaccattgtcaggact
gtgacagccatagattcagacaccggcccgaatgcagaccttcgctatgctcttgtgggg
ggaaatcccttcagactgtttgagattggccacaccaacggagtcatcactctggcagaa
cctctggagcggcgccacagaggtcttcatcgcttggtggtccgggtcaatgacagcggc
gccccctctctctgtgccactgccctggttcatgtcttcatcaatgagagcttggccaac
gcaaccctagtggatgcacaggtggcccgaagcctgatggctcctctttcgttggacatc
gccggggatccagacagcgagcgtgcattggggaaacaacgcctcagtgtagctatcggt
gtcctggcgggagccgcagctgttatcttggttatcctccttgttgtcacggctcgacag
tgcggcgctcaaggcaagaacggttacgaggccggtaagaaggagccagaggaggacttc
ttcagtcctccgggggctcagccacaggccggccgcggcagggggtcagaccgtggacgc
aaacctcggcgagacaaacgcaacggaagtggcggcagtgcagttgcaggaggaggaaag
tcggacaggtcactctacagtggcatcgtcacagtcaatgggctgcgtcgccacgccaac
gacgacgatgaggaggatttgagcagcgccagcgagcgcctggcggcccgctactgtgtc
gtggacggtgaccccggcagccctcggatgggcggcggcaggagacaccagtcgagccca
gatctggccaggcactacaaatccagctcacctctccccgcggtgaatctgcagcctcac
tcccccccagctgagggaaagaagcaccaggcggtccaggatctgcctccctccaacacc
tttgtgggcagcgggggttgtgtggggagtgccggctccagcagcagcagtagtgggggc
agtggcaacgctgatgccatgtccctggggtctgaccagtgctcagaatatggctgccag
actgggaacaagtacagcaaacaggggaccctccgccgggtgaccttctcggtagtgagc
cagccccaggacggcggttgctatgacagcggcatggaggactcggagacgccaagcagc
aagagttcatcgggaccgcgtttgggagccctcccgctgcccgaggaaggctacgagcgg
accacaccggagggcagcgtgggagaggaggagcatgtggagaatgatgccagacagctg
ccagacgtagctctgacaggaaaatgtaccagggagtgtgatgagtttggccactctgac
acctgttggatgcccgtccgcccttcgcctcgccagcgtcagcgccacggcagcgacccc
ccgcggctctccaccttcgccccgggagacgataacaacaatctccgcggcaacgaccac
gagagcgacagcgagagtgccggcagcgcagggagctcggaaccgggggtggtcgtcggc
ggagaaggtcagaggttacccttagccaacggggatcctcttggcaccctgggcagagga
gaccgcaacaggaacatgggcgatcacaaccgcaaccttcttaaccgcaagatgacttca
gcatcctacgacacattcagcagcgcgggcttcgggaggcgccagcaggaggaagacgga
ggtgaaggccagaacccacctgaggtcataccgctgacgcggacgggaggggactacaag
accacgtcctgcctcacgctgtcacgccgtgaggtctacctgtga
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