Larimichthys crocea (large yellow croaker): 104924379
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Entry
104924379 CDS
T04659
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104924379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104924379
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104924379
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104924379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104924379
NCBI-ProteinID:
XP_019109893
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All DBs
Position
XIII:complement(9216695..9245209)
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AA seq
959 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSVQVDAVRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDLPAQALV
ATSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQS
PVKNGNPSSSLSSSSSSSSSSSSSSSSSSSSVSGLTSSSLVSMAIIAVGGGGGGGGGSSG
GNSHHGNSGGLLSNTSAGSYSNATQQQPHPSAQQQQQQQQQQQQQQQQQAKNLVSSPSSA
PISNPITSTNSHLASSTSSPPNVSTQGLFTSSTQSQVLSGPPPTSNSLSLSLGLSLGKGG
MSGSITTSPMSSSLGLSGMPASLSNVASLLSSSTPAPYAQAAASGAVGSGLPGSLGGVIT
TSTNSSLGSIGSGSITVGGPTSSSGGLLGSAPGLTSMGSSILGLSSGQSGLQGSSLVSLS
PVGGLAPGSGVGVIGSNGGSSGSVGSGVVGGNSSLSIRPPSQQKQNGSTSFTGYSAVLAD
SPTDSALNSASQSQSSQPSSLTSSAIQPKDTGPSLLGSLSLSSSSPSPAFYSEAKTVSGS
SLLNGPLSYSQSSDIIKPQEPPSSLKSMAERAALSSGMEGDVPSLHLTPDIFPSSTTAPS
GPPSAPQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRCSE
MQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtggaacaatttgaagacatttggcaaaagcttcacaatgcagccaacgcgaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctagtagaaaac
cgcaaactcatagagacgcaaatggagcggttcaaaatagtggagagagaaaccaagacg
aaggcgtactcgaaagaaggtctgggcctcgcccaaaaggtggacccggcccagaaagag
aaggaggaggtcggcacgtggctaacgaatacgatagacacgctgaacatgcaggtggac
cagttcgagagcgaggtggagtctctctcagtccagacgaggaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaagaagttcatcgagaagcatcggtaccacatc
cggatgctggagacgatactgaggatgctggacaacgactcagtgcaggtggacgccgtc
aggaagatcaaggatgatgtggagtattatctagactcgtctcaggatccagactttgag
gagaatgagtttctatacgacgaccttgacctggaagacctcccagctcaggcgctggtc
gcaacctccccaccgggacactcgcacttggaggacgagatcttccagcactccagcagc
acacccacctccaccacctcatcttcacccatccccccgtcgcctgccacttgcactacg
gagaactcagaagatgacaagaagaggggacgttcaacagacagtgaagttagtcagtcg
cctgtgaagaacggaaacccctcttcctcgttatcctcttcctcctcctcctcatcttcc
tcctcctcgtcctcttcctcttcttcttcctccgtctcgggactgacctcctcctcgctg
gtctctatggcgatcatcgccgtgggaggaggcggcggcggcggcggcggcagctctggg
ggcaacagtcatcacggcaactcggggggtctcctctccaacacttccgctggcagctac
agcaacgccacccagcagcagccgcacccgtcagcacaacaacaacaacaacaacaacaa
cagcaacaacagcagcaacaacagcaggccaaaaacttagttagctccccctcctcagct
cccatctccaaccccatcacctccaccaacagccacctggcctcctccacctcttctcca
cccaacgtcagtacacaggggctcttcacttcaagcacccagtcgcaggttctgtcgggg
cccccgccgacctccaatagtctcagcctcagcctcggcctctcgctggggaaaggcggc
atgtccggctccatcaccaccagcccgatgtcctcgagcctgggcctgtcagggatgccg
gcgtccctgagcaacgtggcgagcctcctctccagctccaccccggcgccctacgctcag
gcagctgcttcgggcgcggtcggctccggcttaccgggctctctgggcggcgtcatcacc
acgtcgaccaacagctcgctgggctccatcggcagcggaagcatcacagtcggcgggccg
acgtcctcaagtggaggtctgctgggctcggcgccggggctgaccagcatgggatcgagc
attctgggtttgagttctggtcagtcggggctgcaggggtcgtccctcgtgtcactgagc
ccggtcggagggttggcgccgggtagcggggtaggagtcatcgggagcaacggaggcagc
tcgggatcagtggggagcggagtggtcggaggaaactcgtcgctgtccatcagaccgccg
agccaacagaagcagaacggtagcacgagcttcacaggttacagcgccgtgttagcagac
agcccgacagactccgccctcaacagtgccagccaatcacaaagcagccaaccctcgtct
ttgacctcctcagccattcagcctaaggacactggtcccagtttactgggctctttgagt
ttgtcgtccagctccccgtcaccggctttctatagcgaggccaagacggtgagcggcagc
agcctgctgaacggaccgctgtcttactcacagtcctccgacatcatcaagccccaggag
cctccgagcagcctgaagtccatggccgagcgagcagcactcagctcagggatggaggga
gacgtgccctccctgcacctcaccccagacatcttccccagcagcactacggccccctcg
ggccccccgtcagcacctcagccctcgctgtcggaggtcagcatccctccgtcgttgggg
gtgtgcccgctggggccggtccccctctccaaagaccagctgtaccaacaggccatggag
gaggcggcgtggacgcacatgccccacccgtccgactccgagaggatcaggtgcagtgaa
atgcagtacctgatgaggaacccgtgccccaccctgcctttccaccaccaggtgccaccg
ccacactccgacactgtagagttttaccagaggctctccacagaaacgctcttcttcatc
ttttactacctggagggcactaaggcccagtatctggcagccaaagccctgaagaagcag
tcatggaggttccacacgaagtacatgatgtggtttcagaggcacgaagaacccaagacc
attacggatgagtttgagcagggaacgtacatttactttgactatgagaaatggggccag
cggaagaaggaaggcttcacgtttgagtaccggtacctagaagaccgagacctccagtga
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