Larimichthys crocea (large yellow croaker): 104924678
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Entry
104924678 CDS
T04659
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104924678
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lco04990
]
104924678
Domain-containing proteins not elsewhere classified [BR:
lco04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
104924678
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
104924678
NCBI-ProteinID:
XP_010736406
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Position
IX:7921509..7956987
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AA seq
613 aa
AA seq
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MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAQAKMNVGDIILSINGISTE
SMNHLEAQNKIKACTGHLSLTIQRPTSVPNDGVPKDEPQEIIKPVPITHPAPSTAYTKPS
SQSAPAYNKTARPFGGGSSAITASSTPEAPKVANIPSASSAFTPAAPSQPPQPPFPLKSS
PAASNSAPANSTPRPSPGRSTFTSPYTSSSTSNPSPAKVTAPSSNPNVPQSSVYNTPINL
YSNTNACEVAMGQRRGLLESQGLSEHFNGKPVEEPENYVYPLSDSSKKRLIEDTEDWHPR
TGTSQSRSFRILAQLTGTENDQASENSGKNEPVDKTTPTVHTSPAAKTFSKSAAAPRNGN
VNSASAYKSPAAQNKPSYQPGAPSGFPKGGAAPSFGKVANPAPRGPDRPTPQPHPQDLNS
VVQRAEHIPAGTRTPMCSKCNNVIRGPFLVAMGMSWHPEEFNCAHCHSSLAENGFVEEKG
QVYCERCYEQFFAPTCGRCQHKILGEVMNALKQTWHVSCFVCVACQQPIRGNMFHMEDGQ
PYCEQDYYSLFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSLEGQPFFSKKD
KALCKKHAHTVNI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagtgtctctctggctggccctgccccctggggctttagactacaa
ggagggaaggacttctgtctgcccctcaccatctcacggctcactgatggaggcaaggca
gcccaagccaagatgaatgttggagacatcattctgtccattaatggcatttccacagag
agcatgaatcacctcgaggcccagaacaagataaaggcctgcacaggccatctcagcctc
actatacagagacccaccagtgtccccaacgatggagtgcctaaggacgaacctcaagaa
atcattaagcctgtcccaatcactcaccctgccccaagcactgcatacaccaagccatcg
agtcagtctgctcctgcttacaacaagacagcccggccttttggggggggcagcagtgcg
atcacagcttcttctaccccggaggcccccaaagtagccaacattccctctgcatcatct
gctttcacgccggctgccccttctcaaccaccacagcctccatttccgctgaagtcgagc
cccgctgcctcaaactcagctccagccaactccactcccagacccagccctggtcgctcc
actttcacctccccgtatacctcttcctccacatccaacccctctccagccaaagtgaca
gccccctcctccaatcctaatgtcccacagtcctccgtctataacacacccatcaacctc
tactccaacacgaatgcttgtgaggtggctatgggccagagacgaggtcttttggagagc
cagggcctgtcagagcacttcaatgggaaaccggttgaggagcctgagaattatgtgtac
ccattgagcgattctagcaagaagcgtctgattgaggacacggaggactggcacccgaga
accggcacctcccagtcccgctccttccgtatcctggcccagctcaccggcactgaaaat
gaccaagcttcagagaacagtggaaagaatgagccagttgacaaaaccacccccactgtg
cacacctcgcctgcagcaaaaacattttccaaatctgcagcagcacccagaaatggaaac
gtcaactctgcttctgcgtacaagagcccagcagcccagaacaagccatcctaccagcct
ggagctccatcaggttttccaaagggtggagcagctccttcgtttggcaaagttgccaac
cctgctcccagaggtccagaccgcccgaccccgcagccacatccacaggacctcaactct
gtggtgcaacgggctgaacacatcccagccggcacacgcaccccaatgtgcagcaagtgc
aacaatgtcatcaggggcccattccttgtggccatgggcatgtcatggcaccctgaggaa
ttcaactgtgctcattgccactcctccctggcagaaaatggatttgtggaggagaagggc
caggtgtactgtgaacgctgctacgagcagttctttgctcccacctgcggccgctgccaa
cacaagattctgggcgaggtcatgaacgccctgaaacagacctggcatgtgtcctgtttc
gtctgtgtcgcctgccaacagccaatcagaggcaacatgtttcacatggaggatggacag
ccatactgtgaacaagactactacagtctgtttgggaccaactgccacggctgtgacttc
cccatcgaggcaggggacaagttcctggaggctctcggattcacctggcatgacacctgc
tttgtgtgtgcggtctgctctacttctctggaaggtcagccgttcttctccaaaaaagac
aaggctttgtgcaagaaacatgcacacaccgtcaacatctga
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