Larimichthys crocea (large yellow croaker): 104924868
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Entry
104924868 CDS
T04659
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104924868 (zswim8)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
104924868 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_ZSWIM8
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
104924868
NCBI-ProteinID:
XP_010736648
LinkDB
All DBs
Position
Unknown
AA seq
1964 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVSGQAGQPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLEGITYCSADKKSATFCWSRAVQLQRGAKAAAGAESSEPGGARVEGGAGVDFKGRGSGH
QEVAVRPKETILTKRKGLSVSGGGGMLVRLGGSVSLALEDGGGKCMYKGPGSSSGGKLKL
TQGGGKGASVGGPGGSGGLGSSKHASAKRRTSSEDSSLEPDLAELSLDDGCSLALGAEAS
NTFEFLPPPPEMLPSPSPLLRDSRKYSSSGGNKMFETKRVSHASAALPAAEPAPPCFPPK
ETVVVVMDMPSATEKEAELEVEPVQNRDEDADSAGSNQPSTAAPRSETAEAPAKPLPQGR
KEAASAGAPAAAAASGSAAGGPANPGAEGGAGGAAGGEAVGEDDYQAYYLGVASEEGADR
QLAENHQEEEPDIFAGMKPLEQEGRMEVLFACAEALHAHGYSNEACRLAVELARDLLANP
PDLKVEQPQTKGKKSKVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLEL
QRPPASTKALEVKLAYQESEVVALLKKIPLGLVEMSAIRERAEQLRDGNFCDYRPVLPLM
LASFIFDVLCTPVCAVVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHP
LLCEGTRRVKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGS
QRSPSKHTAASHGGVSGATGGVSKHAPSSSSATTVAASSSSSSSAVALAGEDVAHQAELN
PVQNSSAGESTAETREHVSDGPPSSSDQQNETAPFKLEATVPSRLALGARCGYSQRCWGS
PVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSL
GSSSSSGSRRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKA
GGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWIT
GQAMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHAL
NPNEIQRALVQCKEQDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGS
GQLRETSGRCGANGGSGRRPPESNCVLDSGANMESQGMTTVTASVTAAAVVPVISVGSTI
YQSHPMPGQAMAHPHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGAAYPQ
GMHPAFIGAQYPFSVATGPQPPMAATAVTFPGVPVPSMTQIAVHPYHTETGLPLSTTVAV
GSVHSGPTIQAIQGASLPSLSSQPGSLVSTPFPAEDEQHSQPISQQGLHYLHSAYRVGML
ALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQ
EIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRS
ARSAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggaacttatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaagactctctgtgctccttcatctcagaggccgagagtctctgtcagaac
tggaggggatggaggaagcagtccgccggacccaactccccgactgtcaagattaaagat
ggccaggtgattccactggtggagttgtcagcaaagcaggtagcgttccacatccctttt
gaggtggtggagaaggtctacccccctgtcccagaacagctccagcttcgcatcgcctac
tggagcttccctgagaatgaggaggacatcaggttatattcctgccttgctaacggtagt
ccagatgaattccaacgtggagagcagctctacaggatcagagctgtcaaagacccgctg
cagatcggcttccatctcagtgccacagtggtgtctggtcaggctggtcagcctaaagga
gcctacaacgtggccgtcatgtttgaccgctgccgcattacttcctgcagctgcacctgt
ggcgccggggccaaatggtgtgcccatgtggtcgcactctgcctctttaggatccataat
gcatcagcagtgtgtctgagagctcctgtctctgagtctttgtccaggctgcagagggac
cagctccaaaagtttgcccagtacctcatcagtgagctgcctcagcagattctaccaaca
gctcagcggctgctggatgagctgctgtcctctcagtccactgccatcaacaccgtgtgt
ggagctccagaccccacagcaggcccttcagcatctgaccagagcacgtggtatctggat
gagtcgacactcagtgacaacatcaagaagactctgcacaagttctgtgggccctcacct
gttgtcttcagtgatgtaaactccatgtacctgtcgtccactgagccgccggctgccgct
gagtgggcatgtctgctgagacctctgaggggccgagagccagagggcatctggaacctt
ttgtccatcgtcagggagatgttcaagagacgggacagcaacgccgccccactgctcgag
atcctcaccgagcagtgcctcacctacgaacagatcatcagctggtggtacagtgttcgg
acctcagcgtcccacagcagtgccagtggccacaccgggcgcagcaacggccagtcagag
gtggcggctcacgcctgtgccagcatgtgtgatgagatggtggtgctatggaggctggca
gtgctcgaccccactatgagcccctgcaggcgtctggaactggcaggccagctgaagcag
tggcacctgaaagttatcgagatagtcaagcggggacaacatcgcaagtccctggataaa
ctgttccagggcttcaagcccgctgtggagtcctgctatttcaactgggaggtggcctac
cctctggaaggcatcacctactgcagtgctgataagaagagcgccacattctgctggtcc
agggcagtgcagctccaaagaggagccaaagctgctgcaggagcagaatcttctgaacca
gggggggcaagagttgaaggtggggctggagtagattttaagggaagaggaagtggtcac
caggaggtggcagtgcgacccaaggagaccatattgacaaagaggaagggtctgtcagtt
agtggaggaggtgggatgctggtgcgtctaggagggagtgtctctctggccctggaagac
ggaggagggaagtgcatgtacaaagggccgggctcctcctctggagggaagctgaaattg
acccaaggaggtgggaagggggcttctgtaggaggtcccggaggaagtggagggttagga
agcagtaagcatgccagtgccaagaggagaaccagcagtgaggacagttcgctggagccg
gacctggctgagctcagcctggatgatggctgcagtctggctctgggcgctgaggccagc
aacacttttgaatttcttcccccgccaccggagatgctgccctccccgagtccactgctc
cgagactcacgcaagtacagcagcagcggggggaacaagatgtttgagacgaagcgtgtc
agccacgcctcagctgcacttcctgctgcagagcccgctccaccctgcttccctccaaaa
gagacggtggtggttgtcatggacatgccaagcgccacagagaaggaagcagagctggag
gtggagcctgtccagaaccgagatgaagatgcagactcggccggcagtaaccaaccttcc
actgctgcgccaagatcggagaccgctgaagcgcctgccaagccgctgccacagggccgc
aaagaagcggcgtctgctggagcaccagcagcagcagcagcaagcgggtcagcagcaggt
ggaccagctaacccaggagcagagggaggagcaggtggagctgcgggaggagaggctgtg
ggtgaggacgactatcaggcatactacctgggtgttgcgtcagaggagggagcagacaga
cagctggctgaaaaccaccaagaggaggagccagacatcttcgcagggatgaaaccgctg
gagcaggaggggcgcatggaggtgctgtttgcgtgtgccgaggccctccatgctcacggc
tacagtaacgaggcttgtcggctggccgtggagttggccagagacctgttggccaaccct
ccagacctgaaggtggagcagcctcagactaagggcaagaagagcaaagtgtcgaccagc
cgacagacgcaggtagccaccaacacactgtcaaaagccgccttcctcctcactgttctc
agcgagcgtctggagctccacaacctggccttcagcaccggcatgttctccttggaactt
cagagaccaccggcatccaccaaagctctggaggtgaagctagcctaccaggagtctgag
gtggtggccctattgaagaagatccctctgggtctggtggagatgtcggccatcagagag
cgagcagagcagctccgagacggaaacttctgtgattacagacctgtgctgcctctcatg
ttggctagctttatctttgatgtactgtgtaccccagtttgtgcagttgtgtccccaacg
ggttcccgtccaccaagccgcaaccgtaacaatgagatgcctggtgatgaggagctgggc
ttcgaggctgctgttgctgcactcggcatgaagaccacagtaagcgaagcggagcatcct
ctgctgtgtgaaggaactagacgtgtgaaaggtgacctggctctggctctcatgatcacc
tacaaggatgaccagagcaagctcaaaaagatactggataagttgttggacagggagagt
cagacccacaagccccagaccctgagctccttctactccagcaagccagcagccggcagc
cagcgtagcccgtccaaacacacggccgccagccacggcggcgtgagcggtgccacgggg
ggcgtctccaaacatgcgccctcgtcttcatctgcaaccactgtggcagcttcttcttcc
agctcttcctctgctgtggcgctggctggtgaagatgtggctcatcaggctgaactgaac
ccagtgcagaacagctcagcaggggagagtactgctgagaccagggagcatgtatcagat
gggcctccttcatcaagcgaccagcagaatgaaaccgctccatttaagctggaggccacg
gtgcccagtcggctagcactgggagcacgctgtggatacagccaacgctgctggggctca
cctgtccggcagaagaagaaacacaccggtatggcaagtattgacagcagcgcaccggag
acgacctcagacagctcccccaccctcagccggcggccgctacgtgggggctgggcagca
acatcatgggggcggggtcaggatagcgatagcatcagcagctcatcgtctgattcgctg
ggctcctcctcgtccagcgggtctcgtagggcagggggcggtgccagggctaagagcact
gacaccagcaggtacaaagggcgacgtccagagtgccatgcccctcacgtccctaaccag
ccctcggaggcagcagcccatttttactttgagctggccaagacggtgcttatcaaagcc
ggaggaaactcctccacgtccatcttcacccagccctcagccagcgggggccaccagggg
ccccacagaaacctgcacctgtgtgcctttgagattggcctgtatgctcttggcctccat
aactttgtctcacccaactggctgtccaggacctactcctcccatgtctcctggatcaca
ggtcaggccatggagatcggcagcgctgccctcaacatcttggtggagtgctgggacggt
catctcactcctccagaggtggcatccttggctgaccgagcgtcgcgggccagggacccc
aacatggttagagcggcggcagagctggccctgagctgcctgcctcacgctcacgccctc
aatcctaatgaaatccagagagccctggtgcagtgcaaagagcaggacaacgtcatgctg
gaaaaggcctgcatggcagtagaggaagcagccaagggtggaggcgtgtaccctgaggtt
ctttttgaggtggctcaccagtggtactggctgtatgagcagtcagtgggtgggggctca
ggccagctgcgggagacctctggccgctgtggcgctaacgggggttcgggcaggaggccc
cccgagtccaattgcgtcctcgacagcggagccaacatggagtctcaggggatgacgaca
gtcacggcctcggtcaccgcggcagccgttgtacctgtcatctctgtgggctccaccatc
tatcagtcccaccccatgcccggccaggccatggctcatccccacagccagggcctacac
ccctacaccaccatccaggcccatctccccaccgtgtgcaccccgcagtacctgggacac
ccgctgcagcacgtcccccgacccaccgtcttccctgtgtctggggctgcgtatccacag
ggaatgcacccagccttcatcggagcccagtacccgttctcagtggccactggccctcag
ccacccatggcagccacagctgtgaccttccccggtgtccctgtaccgtccatgactcag
atcgccgtccacccataccacactgagaccggcctgcccctcagcaccactgtagcagtc
ggcagcgtccactcgggccccactatccaggccatacagggggcttctcttccctccctc
tcctcccagcccggctcattggtcagcactcctttcccagctgaggacgagcagcacagc
cagccaatcagccaacagggcctgcactacctgcattctgcctacagagttggcatgctg
gcattggagatgctgggcaggagggctcacaacgaccaccccaacaacttctccaggagc
ccaccttacaccgaggacgtcaaatggctgctgggactggctgcaagactaggagtcaac
tatgtgtaccagttctgtgtgggagcagcgaaaggcgtcctcagtccattcgtcctgcag
gagatcatcatggaggctctgcagagactcaaccccgcccacatccacgcccatctacga
acacctgctttccaccagctcgtccagcgctgccaacaggcctacctgcagtacatccac
caccggctcatccacctgaccccagccgactacgatgacttcgtcaacatcatccgcagt
gcccggagcgcgttctgcctgacgcctgtagggatgatgcagttcaacgacgtgttgcag
aacctgaagagaggcaagcagaccaaggagctgtggcagcgcatctctctggagatggca
accttctccccctga
DBGET
integrated database retrieval system
