Larimichthys crocea (large yellow croaker): 104924964
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Entry
104924964 CDS
T04659
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6 isoform X1
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104924964 (rnf6)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104924964 (rnf6)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104924964 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF6_N
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
104924964
NCBI-ProteinID:
XP_019129271
LinkDB
All DBs
Position
XXIII:complement(10389227..10395091)
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AA seq
721 aa
AA seq
DB search
MDPPGGGDERRRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQRLD
GAKERMSTQPRAEQRLQTADSGEQQGSSGEGEERGAGGRRGAGGTEPGAETSNGDSLLEW
LNTFRRTGNATRSGQSGNQTWRAVSRTNPNSGEFRFSLEININHDQPEPGEHNDTADTAE
LPVTAPNTTSSSIRTASSFSNPRPSTTPRPAPYPTPRPALSRRTQTRRTRSSTTTLSMSP
PALPAPVAAPAAAQRRGATLHSLAPPPTLPNPPLDQTTPLQQQALNAEVEQGSDHMSASI
DCPRVSPQSVSQAPSVGHELRGSRTRSRGRARRAAAGGGGGVSSRLSRRSRSPLHRIPVA
SATTPSSSGAGGSSIHTVEPGSGTSSVSMETREAVAEPVAVTEPAVETGERESESHVIGS
GSSAVRRHPTIMLDLQVRRIRPGENRDRDSIASRTRSRARVAENTVTFESDSGGFRRTIS
RSERAGIRTYVSTIRIPLRRISETGLGEPNSTALRSILRQIMTGFGELSSLMETEADSET
VAPSHTDASGTNSNTSPTSRLHTNESAASQVGTGVADQERVGLVGSEEDQGGQARLGGGV
VSTTEGRATSRDTNNLVENGTLPILRLAHFFLLNDEEDDEHPRGLTKEQIDNLSTRTYGQ
ASLEGEMGRACSVCINEYAQGNKLRRLPCSHEFHIHCIDRWLSENNTCPICRQPILTVHH
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaccctcctggtgggggagacgaacggcggaggcaggcagagcgtcttcgacgggag
gaggcgtactatcacttcattaatgaactgagcgaagaggagtatcgtctgatgagagac
agcaacctgctcggcactcctggggaggtgacggctgaggagctccggcagcgtctcgac
ggagcgaaggagcgcatgtcaactcagccccgcgctgagcagcgcttgcagactgctgat
tctggagaacagcagggcagcagcggtgagggagaggagagaggggctggagggagacga
ggggcagggggcacagagcctggagcagaaacttctaatggtgactcattactggagtgg
cttaacactttcagacgtactggcaatgccactcgcagtgggcagagtggcaaccagaca
tggcgcgctgtcagccggaccaaccccaacagtggagaatttcgctttagtctcgaaatc
aacatcaaccacgatcagccagagccgggggagcacaatgacactgcggacactgcagag
ctgccagtgactgccccaaacacgacttcatcctccatacgcaccgcgtcctctttctcc
aacccccgcccttcaaccacgccaaggcctgccccgtacccaaccccccgcccggcactc
agtcggaggacgcagacgcggcgtacgcgcagcagcactacaactctttctatgagccca
cctgcacttcccgcaccggtggccgccccagctgctgctcagcggagaggtgccactttg
cactctttagcacctcctccgactcttcccaaccctcctctggatcaaactacacctttg
caacaacaagccctgaatgcagaagtagagcagggcagtgatcatatgtctgcttctata
gactgtcctcgtgtgtcaccccagtctgtatctcaggccccatcagtgggacatgaatta
cggggcagtaggactcgatcacgtggtcgtgcacgcagggctgcggctgggggtgggggt
ggggtttcatcccgtttgtcaaggcgaagccgttcccccttgcacagaatacctgtggcc
agtgccactacgccatcaagcagtggtgccggtggctctagcattcacactgttgagcca
ggcagtggcacaagctccgtttccatggaaacaagagaggctgtggcagaacctgtagct
gtaacagagccagccgtagagacaggagagcgcgagagtgaatcccacgtaataggatca
ggaagttcagcggtgcgacggcacccaaccatcatgttggacctacaggtgagaaggatt
cgacctggggaaaaccgcgatcgggacagcatcgccagtagaacgcgttctcgtgcccgc
gtcgccgagaataccgtcacatttgaaagtgacagcggtggatttagacgcaccatttcc
cgctctgagcgagccgggatccgcacctatgtgagcactatccggattccactgagacgc
attagtgagacgggcctgggggagccaaactccaccgccctgcgctccatcttgcggcag
atcatgactgggtttggggagctgagctccctaatggagacagaggctgattctgaaact
gttgcacctagccacacagatgctagtggtacaaatagtaataccagcccaaccagtcgc
ctgcatacaaacgaaagtgcagccagccaggttggtacaggtgtggccgaccaggagagg
gtgggactggtgggaagtgaagaggaccagggtggacaagccaggctcggaggaggtgta
gtgagcaccacagagggacgggccaccagcagagacaccaacaacctggtagaaaatggc
actctacctattctgcggctggcacacttcttcttgctcaatgatgaggaggatgatgaa
caccctaggggcctgactaaagagcagattgacaatctatccacacgtacctatggtcag
gccagcctggagggggagatgggtcgcgcatgcagcgtctgcatcaacgagtacgcccag
ggcaacaagctacgtcgcctgccctgctcccacgaattccacatccactgcatcgaccgc
tggctctctgaaaacaacacctgccccatctgcaggcagcccatactcacggtgcatcat
gactga
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