Larimichthys crocea (large yellow croaker): 104925262
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Entry
104925262 CDS
T04659
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
104925262 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104925262 (rag1)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104925262 (rag1)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104925262 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4_2
TRAF3_RING
zf-C3HC4
zf-RING_10
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
104925262
NCBI-ProteinID:
XP_010737156
LinkDB
All DBs
Position
XXI:complement(7513332..7518930)
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AA seq
1073 aa
AA seq
DB search
MAEESLGTDDPRSSMPAELQHLHSKYSQWKFKLFRVRSMEKAPLPSEKQSEKGVLLGISS
PTAPNIELDNGVGPGSVMKLCLGGKSKENVDGPGQRVDMKLQEMDTHMNHLRCLCRLCGT
LLRKVKGPLHDVHGGLDETSKLALRKMGCKFPSWPEVILKVFKVDVTEDIESVHPLSFCH
RCWLAAIRGGGVCSFSKIRVPEWKPHSSLCHLCFPRKPSFQRTGRKRRKAILRAQAQSLA
KRTRWDHSDSFAVGERRVLRPFGDRHHGPVLRGWRKTTAQRDQWVRNITHCQKDHLSSKL
ISEKLPVDFVFSFTCLVCDHLLCDPVQSPCGHLFCRSCFIKYSYVLGPHCPACNLRCGPD
DLISPAKAFLSALQCLPLLCPRSGCGKQVILDSFKAHCLDHDLDDQDENRKSLGLDNDLL
TNKGGRPRQHLLSLTRRAQKHRLKELKNQVKVFADKEEGGDLKSVCQTLFLLTLRSANEH
RQADELEAMLQGRGAGLHPAVCLAIRVNTFLSCSQYHKMYRTVKAASGRQIFQPLHALRT
AEKELLPGFHQFEWQPALKNVSSSCNVGIINGLAGLTSSVDDFPADTITRRFRYDVALVS
ALKDLEEDIMDGLRESGMEDSACTSGFSVMIKESCDGMGDVSEKHGGGPVIPEKAVRFSF
TIMSVSVLADEEEEEVTIFTEPKPNSELSCKPLCLTFVDESDHETLTAILWPIVAERDAM
KESRLILPIGGLPRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSGRAEASQNMV
LHSITRNHEENLERYEIWRTNPFSESVEELRERVKGVSAKPFMETHPTLDALHCDIGNAT
EFYKIFQDEIGEVYEKVNPSREERRSWRAALDKQLRNKMKLKPVMRMNGNYARRLMTMEA
VEVVCELVPSEERREVLRELMRLYVQMKPVWRATCPAKECPDQLCRYSFNSQRFADLLSS
AFKYRYNGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAF
ELEDVLKHHWLYTSKYLQKFMEAHKDPVKALQACIEPVENQDDEDMSLEVNDF
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagagcctagggacagacgaccccagatcgtccatgccagctgagcttcaa
catctccactctaagtactctcagtggaagttcaaactctttagggtgaggtccatggag
aaggcacctctgcccagtgagaaacagtctgagaaaggagtcttgttagggatctcgtct
ccaacagctccaaatatagagttagataatggtgtgggtccagggagtgttatgaaatta
tgccttgggggaaaaagcaaggaaaatgtggacggtccaggccagagggtggatatgaag
ctacaagaaatggacacccacatgaaccacctcaggtgcttgtgccgtctttgtggaacg
ctgctgagaaaggttaaaggaccattgcatgatgttcatgggggtctggatgagacaagc
aaacttgccctgcgtaaaatgggttgcaagtttcccagctggccagaggtcatactcaaa
gttttcaaagtggacgtgaccgaggacatagaatctgtccatcctctgtccttctgccat
cgctgctggctggctgccatacgaggagggggcgtctgcagcttctctaaaataagagtc
ccggagtggaaaccccactcttccctctgtcacctttgcttccccaggaaaccttcattt
cagcggactgggaggaagaggcgaaaagccattctcagagctcaggcccagagcctggca
aaaaggaccagatgggaccacagtgacagcttcgctgttggtgaaaggagggttctcaga
ccattcggagaccgtcatcatggtcctgtgctgagaggctggaggaaaactaccgcacag
agagatcaatgggtgaggaacatcacccactgtcagaaagaccacctgagttccaagctg
atctctgagaagctccctgtagactttgtcttttctttcacctgtctggtgtgtgatcac
ctcctctgtgatccagtccagtccccctgtgggcatctcttctgccgcagctgttttata
aaatacagctatgttctaggacctcactgcccggcctgtaacttgcgctgtggccctgat
gacctcatctcgcctgccaaagccttcttatcagctctacaatgcctacctctgctatgc
cctagaagtggctgtggcaagcaggtaattctagactcatttaaagctcattgtttggac
catgacctggatgaccaggatgaaaacaggaagtcattaggacttgacaatgatctgcta
accaataaaggtggaagacctcgtcagcacttgctatccctaacccgtcgtgcccagaag
catcggcttaaggaactgaagaaccaagtgaaggtgtttgcagacaaagaagaaggtggt
gacctgaagtctgtgtgtcagactctgtttctgcttacactgagatctgcaaatgaacac
cggcaggcagatgagctagaggccatgttgcaaggcagaggcgctgggctgcatcctgct
gtgtgtttggccattcgggtcaacactttcctgagctgcagccagtaccataagatgtac
cggactgtcaaagcagccagtggtcgccagatttttcagcccctgcatgccctgcgaact
gcggagaaggagcttctccctggctttcaccagtttgaatggcagccagctctcaagaat
gtgtcttcttcttgcaatgttggcattattaatgggctcgctggattgacttcctcagtg
gatgatttcccagctgacaccatcactcggcggtttcgctatgatgtggcacttgtgtca
gcattaaaggacctggaggaggacatcatggatgggctgagagagagtgggatggaagac
agtgcttgcacctcaggcttcagtgtcatgatcaaagaatcttgtgatggcatgggcgat
gtcagcgagaagcatggtggaggaccagttattcccgagaaggctgtacgtttctctttc
actattatgtctgtctctgtcctagcagacgaggaggaggaagaggttaccatcttcaca
gagccaaagccaaactcagaactctcctgcaagcccctttgcctgacatttgtagatgag
tcagaccatgagacactcacagccatcctgtggcctatcgttgcagagcgtgacgcaatg
aaagagagtaggcttatcctacccataggtggactacctcgttccttccgctttcacttc
agaggcacaggatacgatgagaagatggtgcgtgagatggagggcctcgaagcctcaggg
tccacctacatctgcactctttgtgactccggtcgggcagaggcctctcaaaacatggtg
ctacactccatcacccgcaatcatgaagagaacttagaacgttatgaaatatggcgaacc
aaccccttttctgagtctgtagaggagctgcgagagagagtcaaaggggtttctgccaag
cctttcatggaaacacaccccacactggatgcattacattgtgacataggcaatgccact
gagttctacaaaatcttccaggatgagatcggggaggtgtatgaaaaggtcaaccccagc
cgggaggagcggcgcagctggagggcagccctagataaacaactgagaaacaagatgaag
cttaaaccggtaatgaggatgaatgggaactatgcccgccggctaatgaccatggaggct
gtggaggtagtgtgtgagctggtgccctcagaggagagaagggaggtcctgagggagctt
atgaggctctacgtgcagatgaagcctgtgtggcgtgccacctgcccagccaaggagtgc
cctgaccagctgtgccgctacagtttcaactcccagcgctttgccgacctcctctcctct
gcctttaaatataggtacaatggaaagataaccaattacctgcacaagaccctggcccat
gtgcctgaaatcatagagagagatggatctataggagcctgggccagcgaggggaatgag
tctgcaaacaaactgttcagacgtttcaggaagatgaatgcacgtcagtcaaaggccttt
gagcttgaggatgtgttgaaacatcactggctctacacttccaagtacttgcagaagttc
atggaagctcacaaagacccggtcaaagccctgcaagcttgcattgagccagtagagaat
caggacgatgaggacatgtctcttgaagttaatgatttttga
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